Christina Chaivorapol

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc CompMoby: comparative MobyDick for detection of cis-regulatory motifs
    Christina Chaivorapol
    Department of Biochemistry and Biophysics, California Institute for Quantitative Biomedical Research, Graduate Program in Biological and Medical Informatics, University of California, San Francisco, CA 94143 2540, USA
    BMC Bioinformatics 9:455. 2008
  2. pmc fREDUCE: detection of degenerate regulatory elements using correlation with expression
    Randy Z Wu
    Department of Biochemistry and Biophysics, UCSF, 1700 4th Street, San Francisco, CA 94143 2542, USA
    BMC Bioinformatics 8:399. 2007
  3. pmc Cell- and gene-specific regulation of primary target genes by the androgen receptor
    Eric C Bolton
    Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California 94143, USA
    Genes Dev 21:2005-17. 2007

Collaborators

Detail Information

Publications3

  1. pmc CompMoby: comparative MobyDick for detection of cis-regulatory motifs
    Christina Chaivorapol
    Department of Biochemistry and Biophysics, California Institute for Quantitative Biomedical Research, Graduate Program in Biological and Medical Informatics, University of California, San Francisco, CA 94143 2540, USA
    BMC Bioinformatics 9:455. 2008
    ..Therefore, a computational algorithm should account for both conserved and nonconserved cis-regulatory elements in metazoans...
  2. pmc fREDUCE: detection of degenerate regulatory elements using correlation with expression
    Randy Z Wu
    Department of Biochemistry and Biophysics, UCSF, 1700 4th Street, San Francisco, CA 94143 2542, USA
    BMC Bioinformatics 8:399. 2007
    ..A major challenge is to decipher transcription factor binding sites from sequence and functional genomic data using computational means. While current methods can detect strong binding sites, they are less sensitive to degenerate motifs...
  3. pmc Cell- and gene-specific regulation of primary target genes by the androgen receptor
    Eric C Bolton
    Department of Cellular and Molecular Pharmacology, University of California, San Francisco, California 94143, USA
    Genes Dev 21:2005-17. 2007
    ..Our results provide new insights into cell- and gene-specific mechanisms of transcriptional regulation of androgen-responsive gene networks...