C Alex Buerkle

Summary

Affiliation: University of Wyoming
Country: USA

Publications

  1. doi request reprint Population genomics based on low coverage sequencing: how low should we go?
    C Alex Buerkle
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY, USA
    Mol Ecol 22:3028-35. 2013
  2. pmc The rate of genome stabilization in homoploid hybrid species
    C Alex Buerkle
    Department of Botany, 1000 E University Ave, University of Wyoming, Laramie, Wyoming 82071, USA
    Evolution 62:266-75. 2008
  3. doi request reprint Admixture as the basis for genetic mapping
    C Alex Buerkle
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Trends Ecol Evol 23:686-94. 2008
  4. doi request reprint Ecological context shapes hybridization dynamics
    C Alex Buerkle
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 18:2077-9. 2009
  5. doi request reprint The n = 1 constraint in population genomics
    C A Buerkle
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 20:1575-81. 2011
  6. doi request reprint A powerful regression-based method for admixture mapping of isolation across the genome of hybrids
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, 82071, USA
    Mol Ecol 18:1207-24. 2009
  7. doi request reprint Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, Wyoming 82071, USA
    Evolution 66:2167-81. 2012
  8. pmc Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating
    Christian Lexer
    University of Wyoming, Department of Botany, Laramie, WY 82071, USA
    Genetics 186:699-712. 2010
  9. doi request reprint Hybrid speciation and independent evolution in lineages of alpine butterflies
    Chris C Nice
    Department of Biology, Population and Conservation Biology Program, Texas State University, San Marcos, Texas 78666, USA
    Evolution 67:1055-68. 2013
  10. doi request reprint Genome-wide association genetics of an adaptive trait in lodgepole pine
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 21:2991-3005. 2012

Detail Information

Publications20

  1. doi request reprint Population genomics based on low coverage sequencing: how low should we go?
    C Alex Buerkle
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY, USA
    Mol Ecol 22:3028-35. 2013
    ....
  2. pmc The rate of genome stabilization in homoploid hybrid species
    C Alex Buerkle
    Department of Botany, 1000 E University Ave, University of Wyoming, Laramie, Wyoming 82071, USA
    Evolution 62:266-75. 2008
    ..Our modeling of genome stabilization provides an upper bound for the time interval for reproductive isolation to be established and confirms the rapid nature of homoploid hybrid speciation...
  3. doi request reprint Admixture as the basis for genetic mapping
    C Alex Buerkle
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Trends Ecol Evol 23:686-94. 2008
    ..Our aim in this review is to provide a snapshot of previous and ongoing research, existing methods and challenges, the nature of questions that can be investigated and prospects for the future of admixture mapping...
  4. doi request reprint Ecological context shapes hybridization dynamics
    C Alex Buerkle
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 18:2077-9. 2009
    ..This research raises several questions about the dynamics of hybridization in this well-studied species complex, and highlights methodological and conceptual issues associated with contemporary research on hybridization...
  5. doi request reprint The n = 1 constraint in population genomics
    C A Buerkle
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 20:1575-81. 2011
    ..Future progress in population genomics will follow from research that recognizes the 'n = 1 constraint' and that utilizes appropriate and explicit evolutionary models for analysis...
  6. doi request reprint A powerful regression-based method for admixture mapping of isolation across the genome of hybrids
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, 82071, USA
    Mol Ecol 18:1207-24. 2009
    ....
  7. doi request reprint Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, Wyoming 82071, USA
    Evolution 66:2167-81. 2012
    ..Interestingly, concordance of differentiation and introgression was only partial. We discuss multiple, complementary explanations for this partial concordance...
  8. pmc Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating
    Christian Lexer
    University of Wyoming, Department of Botany, Laramie, WY 82071, USA
    Genetics 186:699-712. 2010
    ..Datasets such as this one are still rare in studies of natural hybrid zones but should soon become more common as high throughput genotyping and resequencing become feasible in nonmodel species...
  9. doi request reprint Hybrid speciation and independent evolution in lineages of alpine butterflies
    Chris C Nice
    Department of Biology, Population and Conservation Biology Program, Texas State University, San Marcos, Texas 78666, USA
    Evolution 67:1055-68. 2013
    ..These lineages have different genome admixture proportions and distinctive trait combinations that suggest unique and independent evolutionary histories...
  10. doi request reprint Genome-wide association genetics of an adaptive trait in lodgepole pine
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 21:2991-3005. 2012
    ..Our results provide a first genome-wide association map of serotiny in pines and demonstrate an inexpensive and efficient method for generating population genomic data...
  11. pmc Genomics of isolation in hybrids
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Philos Trans R Soc Lond B Biol Sci 367:439-50. 2012
    ....
  12. doi request reprint Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies
    Zachariah Gompert
    Department of Botany, Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 19:2455-73. 2010
    ..This study demonstrates the potential of using genome-level data to better understand the phylogeographic history of populations...
  13. pmc Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    BMC Genomics 11:180. 2010
    ..Here we describe a sequencing study of expressed genes from P. contorta, including their assembly and annotation, and their potential for molecular marker development to support population and association genetic studies...
  14. doi request reprint Genome divergence and the genetic architecture of barriers to gene flow between lycaeides idas and L. Melissa
    Zachariah Gompert
    Department of Botany, University of Wyoming, Laramie, Wyoming Department of Biology, Texas State University, San Marcos, Texas
    Evolution 67:2498-514. 2013
    ..Although these results are encouraging, we highlight several difficulties related to understanding the genetics of speciation. ..
  15. doi request reprint Low levels of population genetic structure in Pinus contorta (Pinaceae) across a geographic mosaic of co-evolution
    Thomas L Parchman
    Department of Botany, Dept 3165, 1000 E University Ave, University of Wyoming, Laramie, Wyoming 82071, USA
    Am J Bot 98:669-79. 2011
    ....
  16. doi request reprint Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine
    Mark R Lesser
    Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol Resour 12:448-55. 2012
    ..Our results indicate the utility of mining pyrosequenced EST collections for gene-based SSRs and provide a source of molecular markers that should bolster evolutionary genetic investigations across the genus Pinus...
  17. pmc A hierarchical Bayesian model for next-generation population genomics
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, Wyoming 82071, USA
    Genetics 187:903-17. 2011
    ..This model will facilitate the population genetic analysis of a wide range of organisms on the basis of next-generation sequence data...
  18. doi request reprint Bayesian estimation of genomic clines
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 20:2111-27. 2011
    ....
  19. pmc Genomic consequences of multiple speciation processes in a stick insect
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Proc Biol Sci 279:5058-65. 2012
    ..Future work could adopt experimental, mapping and functional approaches to directly test which genetic regions are affected by selection and determine their physical location in the genome...
  20. doi request reprint De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence
    Aaron A Comeault
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Mol Ecol Resour 12:549-61. 2012
    ..The results suggest variable levels of genetic divergence and gene flow among taxon pairs and genes and illustrate a first step towards future genomic work in Timema...