Affiliation: University of Maryland
- Fault tolerance in protein interaction networks: stable bipartite subgraphs and redundant pathwaysArthur Brady
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA
PLoS ONE 4:e5364. 2009..We uncover some interesting biological examples of previously unknown putative redundant pathways in such areas as vesicle-mediated transport and DNA repair...
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov modelsArthur Brady
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
Nat Methods 6:673-6. 2009..We also describe how combining Phymm with sequence alignment algorithms improves accuracy...
- MetaRef: a pan-genomic database for comparative and community microbial genomicsKatherine Huang
Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA, Institute for Genome Sciences, University of Maryland School of Medicine, 801 W Baltimore St, Baltimore, MD 21201, USA, Biostatistics Department, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA 02115, USA and Centre for Integrative Biology, University of Trento, Via Sommarive 14, 38123 Povo Trento, Italy
Nucleic Acids Res 42:D617-24. 2014..MetaRef provides all information both as an online browsable resource and as downloadable sequences and tabular data files that can be used for subsequent offline studies. ..