David J Baumler

Summary

Affiliation: University of Wisconsin
Country: USA

Publications

  1. pmc Inferring ancient metabolism using ancestral core metabolic models of enterobacteria
    David J Baumler
    Genome Center of Wisconsin, University of Wisconsin Madison, Madison, Wisconsin, USA
    BMC Syst Biol 7:46. 2013
  2. pmc Using comparative genomics for inquiry-based learning to dissect virulence of Escherichia coli O157:H7 and Yersinia pestis
    David J Baumler
    BACTER Institute, University of Wisconsin, Madison, WI 53706, USA
    CBE Life Sci Educ 11:81-93. 2012
  3. pmc H-NS controls metabolism and stress tolerance in Escherichia coli O157:H7 that influence mouse passage
    Irfan Erol
    Department of Food Hygiene and Technology, University of Ankara, Ankara, Turkey
    BMC Microbiol 6:72. 2006
  4. pmc The evolution of metabolic networks of E. coli
    David J Baumler
    Genome Center of Wisconsin, University of Wisconsin Madison, Madison, Wisconsin, USA
    BMC Syst Biol 5:182. 2011
  5. ncbi request reprint Sulfate requirement for heterotrophic growth of "Ferroplasma acidarmanus" strain fer1
    David J Baumler
    Cellular and Molecular Biology Program, Kaspar Laboratory, University of Wisconsin Madison, 1925 Willow Dr, Madison, WI 53706, USA
    Res Microbiol 156:492-8. 2005
  6. pmc Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7
    Kwang Cheol Jeong
    Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA
    BMC Microbiol 8:181. 2008
  7. pmc Molybdate treatment and sulfate starvation decrease ATP and DNA levels in Ferroplasma acidarmanu
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, Madison, Wisconsin, USA
    Archaea 2:205-9. 2008
  8. pmc Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria
    Jeremy D Glasner
    Genome Center, University of Wisconsin, 425G Henry Mall, Madison, Madison, WI 53703, USA
    Nucleic Acids Res 36:D519-23. 2008
  9. ncbi request reprint Enhancement of acid tolerance in Zymomonas mobilis by a proton-buffering peptide
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, 1925 Willow Drive, Madison, 53706 1187, USA
    Appl Biochem Biotechnol 134:15-26. 2006
  10. ncbi request reprint Production of methanethiol and volatile sulfur compounds by the archaeon "Ferroplasma acidarmanus"
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, Madison, WI, 53706, USA
    Extremophiles 11:841-51. 2007

Detail Information

Publications12

  1. pmc Inferring ancient metabolism using ancestral core metabolic models of enterobacteria
    David J Baumler
    Genome Center of Wisconsin, University of Wisconsin Madison, Madison, Wisconsin, USA
    BMC Syst Biol 7:46. 2013
    ..Nutrient availability varies across niches, and evolution of metabolic networks likely played a key role in adaptation...
  2. pmc Using comparative genomics for inquiry-based learning to dissect virulence of Escherichia coli O157:H7 and Yersinia pestis
    David J Baumler
    BACTER Institute, University of Wisconsin, Madison, WI 53706, USA
    CBE Life Sci Educ 11:81-93. 2012
    ..coli O157:H7 or Y. pestis. Each of these educational modules offers educators new ready-to-implement resources for integrating comparative genomic topics into their curricula...
  3. pmc H-NS controls metabolism and stress tolerance in Escherichia coli O157:H7 that influence mouse passage
    Irfan Erol
    Department of Food Hygiene and Technology, University of Ankara, Ankara, Turkey
    BMC Microbiol 6:72. 2006
    ....
  4. pmc The evolution of metabolic networks of E. coli
    David J Baumler
    Genome Center of Wisconsin, University of Wisconsin Madison, Madison, Wisconsin, USA
    BMC Syst Biol 5:182. 2011
    ..coli strains could enhance these efforts...
  5. ncbi request reprint Sulfate requirement for heterotrophic growth of "Ferroplasma acidarmanus" strain fer1
    David J Baumler
    Cellular and Molecular Biology Program, Kaspar Laboratory, University of Wisconsin Madison, 1925 Willow Dr, Madison, WI 53706, USA
    Res Microbiol 156:492-8. 2005
    ..Sulfide was absent in the precipitate but zinc and sulfur were detected. These data demonstrate that SO4 is required for heterotrophic growth of strain fer1 and may have a role in the global sulfur cycle...
  6. pmc Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7
    Kwang Cheol Jeong
    Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA
    BMC Microbiol 8:181. 2008
    ..coli have reduced acid tolerance when compared to the parent strain although the role of Dps in acid tolerance is unclear. This study investigated the mechanism by which Dps contributes to acid tolerance in E. coli O157:H7...
  7. pmc Molybdate treatment and sulfate starvation decrease ATP and DNA levels in Ferroplasma acidarmanu
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, Madison, Wisconsin, USA
    Archaea 2:205-9. 2008
    ..Sulfate was coupled to cellular ATP content and maintenance of DNA integrity in F. acidarmanus, a finding that may be applicable to other acidophiles that are typically found in sulfate-rich biotopes...
  8. pmc Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria
    Jeremy D Glasner
    Genome Center, University of Wisconsin, 425G Henry Mall, Madison, Madison, WI 53703, USA
    Nucleic Acids Res 36:D519-23. 2008
    ..ERIC brings information together from disparate sources and supports data comparison across different organisms, analysis of varying data types and visualization of analyses in human and computer-readable formats...
  9. ncbi request reprint Enhancement of acid tolerance in Zymomonas mobilis by a proton-buffering peptide
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, 1925 Willow Drive, Madison, 53706 1187, USA
    Appl Biochem Biotechnol 134:15-26. 2006
    ..Results from this study demonstrate that the production of a peptide with a high proportion of basic amino acids can contribute to protection from low pH and weak organic acids such as acetic acid...
  10. ncbi request reprint Production of methanethiol and volatile sulfur compounds by the archaeon "Ferroplasma acidarmanus"
    David J Baumler
    Cellular and Molecular Biology, University of Wisconsin, Madison, WI, 53706, USA
    Extremophiles 11:841-51. 2007
    ..acidarmanus" produces methanethiol through the metabolism of methionine, cysteine, or sulfate. This is the first report of a methanethiol-producing acidophile, thus identifying a new contributor to the global sulfur cycle...
  11. pmc Reduction of Escherichia coli O157:H7 shedding in cattle by addition of chitosan microparticles to feed
    Kwang Cheol Jeong
    Department of Bacteriology, University of Wisconsin, 1550 Linden Drive, Madison, WI 53706, USA
    Appl Environ Microbiol 77:2611-6. 2011
    ..coli cells. Additional studies are needed to determine the impact of CM feeding on animal production, but the results from this study indicate that supplementing feed with CM reduces the shedding of E. coli O157:H7 in cattle...
  12. ncbi request reprint dps expression in Escherichia coli O157:H7 requires an extended -10 region and is affected by the cAMP receptor protein
    Kwang Cheol Jeong
    Department of Food Microbiology and Toxicology, University of Wisconsin, Madison, WI 53706 1187, USA
    Biochim Biophys Acta 1759:51-9. 2006
    ....