Susan Bassham

Summary

Affiliation: University of Oregon
Country: USA

Publications

  1. pmc Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages
    Susan Bassham
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR 97403, USA
    BMC Biol 6:35. 2008
  2. pmc SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, OR, USA
    Methods Mol Biol 772:157-78. 2011
  3. pmc Local de novo assembly of RAD paired-end contigs using short sequencing reads
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS ONE 6:e18561. 2011
  4. doi request reprint Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403, USA
    Dev Dyn 237:1490-9. 2008
  5. ncbi request reprint The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
    Susan Bassham
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Development 132:4259-72. 2005
  6. pmc Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
    PAUL A HOHENLOHE
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Philos Trans R Soc Lond B Biol Sci 367:395-408. 2012
  7. ncbi request reprint Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Dev Biol 285:298-315. 2005
  8. pmc The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing
    Julian Catchen
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
    Mol Ecol 22:2864-83. 2013
  9. doi request reprint Stacks: an analysis tool set for population genomics
    Julian Catchen
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Mol Ecol 22:3124-40. 2013
  10. pmc Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    PAUL A HOHENLOHE
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS Genet 6:e1000862. 2010

Collaborators

Detail Information

Publications11

  1. pmc Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages
    Susan Bassham
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR 97403, USA
    BMC Biol 6:35. 2008
    ..Separate from the vertebrate genome expansions, a duplication also created two Pax2/5/8 genes in the common ancestor of ascidian and larvacean urochordates...
  2. pmc SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, OR, USA
    Methods Mol Biol 772:157-78. 2011
    ..Despite considerable progress, the development of analytical tools remains in its infancy, and further work is needed to fully quantify sampling variance and biases in these data types...
  3. pmc Local de novo assembly of RAD paired-end contigs using short sequencing reads
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS ONE 6:e18561. 2011
    ....
  4. doi request reprint Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403, USA
    Dev Dyn 237:1490-9. 2008
    ....
  5. ncbi request reprint The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
    Susan Bassham
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Development 132:4259-72. 2005
    ....
  6. pmc Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
    PAUL A HOHENLOHE
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Philos Trans R Soc Lond B Biol Sci 367:395-408. 2012
    ....
  7. ncbi request reprint Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Dev Biol 285:298-315. 2005
    ....
  8. pmc The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing
    Julian Catchen
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
    Mol Ecol 22:2864-83. 2013
    ..Our results exhibit the power of next-generation sequencing genomic approaches such as RAD-seq to identify both historical population structure and recent colonization history...
  9. doi request reprint Stacks: an analysis tool set for population genomics
    Julian Catchen
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Mol Ecol 22:3124-40. 2013
    ..The expanded population genomics functions in Stacks will make it a useful tool to harness the newest generation of massively parallel genotyping data for ecological and evolutionary genetics...
  10. pmc Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    PAUL A HOHENLOHE
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS Genet 6:e1000862. 2010
    ....
  11. pmc Seeing chordate evolution through the Ciona genome sequence
    Cristian Canestro
    Institute of Neuroscience, 1254 University of Oregon, 1425 E, 13th Avenue, Eugene, OR 97403, USA
    Genome Biol 4:208. 2003
    ....