Susan Bassham

Summary

Affiliation: University of Oregon
Country: USA

Publications

  1. ncbi Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages
    Susan Bassham
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR 97403, USA
    BMC Biol 6:35. 2008
  2. ncbi SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, OR, USA
    Methods Mol Biol 772:157-78. 2011
  3. ncbi Local de novo assembly of RAD paired-end contigs using short sequencing reads
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS ONE 6:e18561. 2011
  4. ncbi Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403, USA
    Dev Dyn 237:1490-9. 2008
  5. ncbi The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
    Susan Bassham
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Development 132:4259-72. 2005
  6. ncbi Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
    PAUL A HOHENLOHE
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Philos Trans R Soc Lond B Biol Sci 367:395-408. 2012
  7. ncbi Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Dev Biol 285:298-315. 2005
  8. ncbi Seeing chordate evolution through the Ciona genome sequence
    Cristian Canestro
    Institute of Neuroscience, 1254 University of Oregon, 1425 E, 13th Avenue, Eugene, OR 97403, USA
    Genome Biol 4:208. 2003
  9. ncbi Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    PAUL A HOHENLOHE
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS Genet 6:e1000862. 2010

Collaborators

Detail Information

Publications9

  1. ncbi Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages
    Susan Bassham
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, OR 97403, USA
    BMC Biol 6:35. 2008
    ..Separate from the vertebrate genome expansions, a duplication also created two Pax2/5/8 genes in the common ancestor of ascidian and larvacean urochordates...
  2. ncbi SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, OR, USA
    Methods Mol Biol 772:157-78. 2011
    ..Despite considerable progress, the development of analytical tools remains in its infancy, and further work is needed to fully quantify sampling variance and biases in these data types...
  3. ncbi Local de novo assembly of RAD paired-end contigs using short sequencing reads
    Paul D Etter
    Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS ONE 6:e18561. 2011
    ....
  4. ncbi Evolution of the thyroid: anterior-posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403, USA
    Dev Dyn 237:1490-9. 2008
    ....
  5. ncbi The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
    Susan Bassham
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Development 132:4259-72. 2005
    ....
  6. ncbi Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
    PAUL A HOHENLOHE
    Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403 5289, USA
    Philos Trans R Soc Lond B Biol Sci 367:395-408. 2012
    ....
  7. ncbi Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
    Cristian Canestro
    Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
    Dev Biol 285:298-315. 2005
    ....
  8. ncbi Seeing chordate evolution through the Ciona genome sequence
    Cristian Canestro
    Institute of Neuroscience, 1254 University of Oregon, 1425 E, 13th Avenue, Eugene, OR 97403, USA
    Genome Biol 4:208. 2003
    ....
  9. ncbi Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    PAUL A HOHENLOHE
    Center for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon, United States of America
    PLoS Genet 6:e1000862. 2010
    ....