Dinesh K Barupal

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Hydrocarbon phenotyping of algal species using pyrolysis-gas chromatography mass spectrometry
    Dinesh K Barupal
    Genome Center, University of California, Davis, USA
    BMC Biotechnol 10:40. 2010
  2. pmc MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity
    Dinesh K Barupal
    UC Davis Genome Center, Metabolomics, Davis, CA 95616, USA
    BMC Bioinformatics 13:99. 2012
  3. pmc System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium
    Do Yup Lee
    University of California, Davis Genome Center, Davis, California 95616, USA
    Mol Cell Proteomics 11:973-88. 2012
  4. pmc Induced pluripotent stem cells show metabolomic differences to embryonic stem cells in polyunsaturated phosphatidylcholines and primary metabolism
    John K Meissen
    University of California Davis Genome Center, University of California Davis, Davis, California, USA
    PLoS ONE 7:e46770. 2012
  5. pmc The volatile compound BinBase mass spectral database
    Kirsten Skogerson
    Genome Center, University of California, Davis, CA 95616, USA
    BMC Bioinformatics 12:321. 2011
  6. pmc Extending biochemical databases by metabolomic surveys
    Oliver Fiehn
    University of California Davis Genome Center, Davis, California 95616, USA
    J Biol Chem 286:23637-43. 2011

Collaborators

Detail Information

Publications6

  1. pmc Hydrocarbon phenotyping of algal species using pyrolysis-gas chromatography mass spectrometry
    Dinesh K Barupal
    Genome Center, University of California, Davis, USA
    BMC Biotechnol 10:40. 2010
    ..Biofuels derived from algae biomass and algae lipids might reduce dependence on fossil fuels. Existing analytical techniques need to facilitate rapid characterization of algal species by phenotyping hydrocarbon-related constituents...
  2. pmc MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity
    Dinesh K Barupal
    UC Davis Genome Center, Metabolomics, Davis, CA 95616, USA
    BMC Bioinformatics 13:99. 2012
    ..Hence, network visualizations that rely on current biochemical databases are incomplete and also fail to visualize novel, structurally unidentified metabolites...
  3. pmc System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium
    Do Yup Lee
    University of California, Davis Genome Center, Davis, California 95616, USA
    Mol Cell Proteomics 11:973-88. 2012
    ..Metabolism in Chlamydomonas readily responds to total available media nitrogen with temporal increases in short-chain free fatty acids and turnover of internal proteins, long before nitrogen resources are depleted...
  4. pmc Induced pluripotent stem cells show metabolomic differences to embryonic stem cells in polyunsaturated phosphatidylcholines and primary metabolism
    John K Meissen
    University of California Davis Genome Center, University of California Davis, Davis, California, USA
    PLoS ONE 7:e46770. 2012
    ..The identified metabolomics signatures of iPSCs and ESCs may have important implications for functional regulation of maintenance and induction of pluripotency...
  5. pmc The volatile compound BinBase mass spectral database
    Kirsten Skogerson
    Genome Center, University of California, Davis, CA 95616, USA
    BMC Bioinformatics 12:321. 2011
    ..In past decades, sampling methods and instrumentation for the analysis of complex volatile mixtures have improved; however, design and implementation of database tools to process and store the complex datasets have lagged behind...
  6. pmc Extending biochemical databases by metabolomic surveys
    Oliver Fiehn
    University of California Davis Genome Center, Davis, California 95616, USA
    J Biol Chem 286:23637-43. 2011
    ..The current status in metabolic databases is reviewed concomitant with tools to map and visualize the metabolome...