Francois Baneyx

Summary

Affiliation: University of Washington
Country: USA

Publications

  1. doi Editorial: Nanobio versus Bionano - what's in a name?
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, USA
    Biotechnol J 8:158-9. 2013
  2. ncbi Recombinant protein folding and misfolding in Escherichia coli
    Francois Baneyx
    Departments of Chemical Engineering and Bioengineering, University of Washington, Box 351750, Seattle, Washington 98195, USA
    Nat Biotechnol 22:1399-408. 2004
  3. ncbi Selection and analysis of solid-binding peptides
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195 1750, USA
    Curr Opin Biotechnol 18:312-7. 2007
  4. ncbi Identification and characterization of Cu(2)O- and ZnO-binding polypeptides by Escherichia coli cell surface display: toward an understanding of metal oxide binding
    Corrine K Thai
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Biotechnol Bioeng 87:129-37. 2004
  5. pmc A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function
    Paulene M Quigley
    Department of Biochemistry, Department of Chemical Engineering, and Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195 7742, USA
    Protein Sci 13:269-77. 2004
  6. ncbi Nonequilibrium synthesis and assembly of hybrid inorganic-protein nanostructures using an engineered DNA binding protein
    Haixia Dai
    Departments of Chemical Engineering, Materials Science and Engineering, and Microbiology, University of Washington, Seattle, WA 98195 1750, USA
    J Am Chem Soc 127:15637-43. 2005
  7. ncbi The N-terminal domain of Escherichia coli ClpB enhances chaperone function
    I Ting Chow
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195, USA
    FEBS Lett 579:4242-8. 2005
  8. doi Folding engineering strategies for efficient membrane protein production in E. coli
    Brent L Nannenga
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Methods Mol Biol 899:187-202. 2012
  9. ncbi Regulation of Escherichia coli hchA, a stress-inducible gene encoding molecular chaperone Hsp31
    Mirna Mujacic
    Department of Bioengineering, University of Washington, Seattle, WA, USA
    Mol Microbiol 60:1576-89. 2006
  10. doi Three-dimensional architecture of inorganic nanoarrays electrodeposited through a surface-layer protein mask
    Daniel B Allred
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Nano Lett 8:1434-8. 2008

Collaborators

Detail Information

Publications39

  1. doi Editorial: Nanobio versus Bionano - what's in a name?
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, USA
    Biotechnol J 8:158-9. 2013
    ..The editors of the issue, François Baneyx and Je-Kyun Park discuss the similarities and differencesbetween the two in their editorial...
  2. ncbi Recombinant protein folding and misfolding in Escherichia coli
    Francois Baneyx
    Departments of Chemical Engineering and Bioengineering, University of Washington, Box 351750, Seattle, Washington 98195, USA
    Nat Biotechnol 22:1399-408. 2004
    ..coli will remain an important host for the production of both commodity and high value added proteins...
  3. ncbi Selection and analysis of solid-binding peptides
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195 1750, USA
    Curr Opin Biotechnol 18:312-7. 2007
    ..Here, we review how these polypeptides are selected and progress in the understanding of their interaction with inorganic and synthetic materials...
  4. ncbi Identification and characterization of Cu(2)O- and ZnO-binding polypeptides by Escherichia coli cell surface display: toward an understanding of metal oxide binding
    Corrine K Thai
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Biotechnol Bioeng 87:129-37. 2004
    ..The implications of our results in understanding the rules governing the interaction between peptides and inorganic compounds and in their use for the design of hybrid nanoarchitectures are discussed...
  5. pmc A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function
    Paulene M Quigley
    Department of Biochemistry, Department of Chemical Engineering, and Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195 7742, USA
    Protein Sci 13:269-77. 2004
    ..The proposed mode of action of flexible loops in the functioning of Hsp31 may be a general principle employed by other chaperones...
  6. ncbi Nonequilibrium synthesis and assembly of hybrid inorganic-protein nanostructures using an engineered DNA binding protein
    Haixia Dai
    Departments of Chemical Engineering, Materials Science and Engineering, and Microbiology, University of Washington, Seattle, WA 98195 1750, USA
    J Am Chem Soc 127:15637-43. 2005
    ..The protein shell retains the DNA-binding traits of TraI, as evidenced by the spontaneous organization of nanoparticles onto circular double-stranded DNA...
  7. ncbi The N-terminal domain of Escherichia coli ClpB enhances chaperone function
    I Ting Chow
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195, USA
    FEBS Lett 579:4242-8. 2005
    ..Our results are consistent with a model in which the N-domain of ClpB95 maximizes substrate processing under conditions where the cellular supply of free DnaK-DnaJ is limiting...
  8. doi Folding engineering strategies for efficient membrane protein production in E. coli
    Brent L Nannenga
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Methods Mol Biol 899:187-202. 2012
    ..coli. Methods to quantify membrane proteins by sodium dodecyl sulfate polyacrylamide gel electrophoresis are also provided...
  9. ncbi Regulation of Escherichia coli hchA, a stress-inducible gene encoding molecular chaperone Hsp31
    Mirna Mujacic
    Department of Bioengineering, University of Washington, Seattle, WA, USA
    Mol Microbiol 60:1576-89. 2006
    ..Based on hchA heat-inducibility and membership in the sigmaS general stress regulon, we propose that Hsp31 performs a protective function under a wide range of stress conditions...
  10. doi Three-dimensional architecture of inorganic nanoarrays electrodeposited through a surface-layer protein mask
    Daniel B Allred
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Nano Lett 8:1434-8. 2008
    ....
  11. ncbi Through-mask anodic patterning of copper surfaces and film stability in biological media
    Haixia Dai
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, USA
    Langmuir 20:3483-6. 2004
  12. ncbi Electrochemical nanofabrication using crystalline protein masks
    Daniel B Allred
    Chemical Engineering Department, University of Washington, Seattle, Washington 98195 1750, USA
    Nano Lett 5:609-13. 2005
    ..This protein-based approach to electrochemical nanofabrication should permit the creation of a wide variety of two-dimensional inorganic structures...
  13. pmc Reprogramming chaperone pathways to improve membrane protein expression in Escherichia coli
    Brent L Nannenga
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, USA
    Protein Sci 20:1411-20. 2011
    ..The implications of our results on the interplay of TF, SRP, YidC, and SecYEG in membrane protein biogenesis are discussed...
  14. pmc Aqueous, protein-driven synthesis of transition metal-doped ZnS immuno-quantum dots
    Weibin Zhou
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, Washington 98195, United States
    ACS Nano 5:8013-8. 2011
    ..They can be stored for months at 4 °C, are stable over a physiological range of pH and salt concentrations, can be decorated with variable amounts of antibodies by direct mixing, and hold promise for biosensing and imaging applications...
  15. ncbi Conformational control of inorganic adhesion in a designer protein engineered for cuprous oxide binding
    Woo Seok Choe
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, USA
    Langmuir 23:11347-50. 2007
    ..Our results suggest that caution should be exerted when extrapolating from statistical data and that, in some cases, conformation is more important than composition in determining peptide-inorganic adhesion...
  16. ncbi A set of multicolored Photinus pyralis luciferase mutants for in vivo bioluminescence applications
    Elyse Shapiro
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195 1750, USA
    Protein Eng Des Sel 18:581-7. 2005
    ..The set of multicolored luciferase mutants described here may prove useful for a variety of applications including biosensing, pH monitoring, and tissue and animal imaging...
  17. ncbi Improving heterologous protein folding via molecular chaperone and foldase co-expression
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Methods Mol Biol 205:171-97. 2003
  18. ncbi Cold-inducible promoters for heterologous protein expression
    Francois Baneyx
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Methods Mol Biol 205:1-18. 2003
  19. pmc Integrity of N- and C-termini is important for E. coli Hsp31 chaperone activity
    M S R Sastry
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Protein Sci 18:1439-47. 2009
    ..The structural and functional sensitivity of Hsp31 to lengthening is consistent with the high degree of conservation of class I Hsp31 orthologs and will serve as a cautionary tale on the implications of affinity tagging...
  20. pmc The linker-loop region of Escherichia coli chaperone Hsp31 functions as a gate that modulates high-affinity substrate binding at elevated temperatures
    M S R Sastry
    Departments of Chemical Engineering and Biochemistry and Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA
    Proc Natl Acad Sci U S A 101:8587-92. 2004
    ..This simple yet efficient strategy to capture partially folded proteins under heat-shock conditions may be shared by other folding modulators...
  21. doi Laying out ground rules for protein-aided nanofabrication: ZnO synthesis at 70°C as a case study
    Sathana Kitayaporn
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, USA
    Biotechnol Bioeng 109:1912-8. 2012
    ....
  22. pmc Engineered Escherichia coli silver-binding periplasmic protein that promotes silver tolerance
    Ruth Hall Sedlak
    Department of Microbiology, University of Washington, Seattle, Washington, USA
    Appl Environ Microbiol 78:2289-96. 2012
    ..Engineered metal-ion-tolerant microorganisms such as this E. coli strain could potentially be used in applications ranging from remediation to interrogation of biomolecule-metal interactions in vivo...
  23. ncbi Escherichia coli Hsp31 functions as a holding chaperone that cooperates with the DnaK-DnaJ-GrpE system in the management of protein misfolding under severe stress conditions
    Mirna Mujacic
    Department of Bioengineering, University of Washington, Box 351750, Seattle, WA 98195, USA
    Mol Microbiol 51:849-59. 2004
    ..This additional line of defence would complement the roles of DnaK-DnaJ-GrpE, ClpB and IbpB in the management of thermally induced cellular protein misfolding...
  24. doi A genetic approach for controlling the binding and orientation of proteins on nanoparticles
    Atanu Sengupta
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, USA
    Langmuir 24:2000-8. 2008
    ..The genetic route described here may prove useful to study the orientation of other proteins on a variety of SERS-active surfaces, to improve biosensors performance, and to control functional nanobiomaterials assembly...
  25. pmc Chaperone Hsp31 contributes to acid resistance in stationary-phase Escherichia coli
    Mirna Mujacic
    Department of Bioengineering, University of Washington, Box 351750, Seattle, WA 98195 1750, USA
    Appl Environ Microbiol 73:1014-8. 2007
    ..We show here that Hsp31 plays an important role in the acid resistance of starved Escherichia coli but that it has little influence on oxidative-stress survival...
  26. pmc Stress-based identification and classification of antibacterial agents: second-generation Escherichia coli reporter strains and optimization of detection
    Elyse Shapiro
    Department of Chemical Engineering, University of Washington, Seattle, WA 98195 1750, USA
    Antimicrob Agents Chemother 46:2490-7. 2002
    ....
  27. pmc Biomineralization and size control of stable calcium phosphate core-protein shell nanoparticles: potential for vaccine applications
    David Chiu
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Bioconjug Chem 23:610-7. 2012
    ....
  28. pmc Enhanced expression of membrane proteins in E. coli with a P(BAD) promoter mutant: synergies with chaperone pathway engineering strategies
    Brent L Nannenga
    Department of Chemical Engineering, University of Washington, Seattle, WA 98195 1750, USA
    Microb Cell Fact 10:105. 2011
    ..However, MP toxicity and low yields in normally robust expression hosts such as E. coli has curtailed progress in our understanding of their structure and function...
  29. doi Single-pot biofabrication of zinc sulfide immuno-quantum dots
    Weibin Zhou
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, Washington 98195, USA
    J Am Chem Soc 132:4731-8. 2010
    ..Murine IgG(1) antibodies exhibit high affinity (K(d) = 60 nM) for the protein shell, and stable immuno-QDs with a hydrodynamic diameter of 14.1 +/- 1.3 nm are readily obtained by mixing biofabricated nanocrystals with human IgG...
  30. doi Enhancing the secretory yields of leech carboxypeptidase inhibitor in Escherichia coli: influence of trigger factor and signal recognition particle
    Juan Miguel Puertas
    Department of Chemical Engineering, University of Washington, Seattle, WA 98195 1750, USA
    Protein Expr Purif 74:122-8. 2010
    ..Our results show that competition between SRP and TF can interfere with efficient export of recombinant proteins targeted to the SRP pathway and establish TF-deficient strains and SRP co-expression as a simple solution to improve yields...
  31. pmc Carbon-binding designer proteins that discriminate between sp2- and sp3-hybridized carbon surfaces
    Brandon L Coyle
    Department of Chemical Engineering, University of Washington, Seattle, Washington 98195 1750, United States
    Langmuir 29:4839-46. 2013
    ..Our results emphasize the importance of understanding both bulk and molecular recognition events when exploiting the adhesive properties of solid-binding peptides and proteins in technological applications...
  32. ncbi Stability of S-layer proteins for electrochemical nanofabrication
    Alvaro Presenda
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Colloids Surf B Biointerfaces 57:256-61. 2007
    ..e., retention of long-range order) defined in the context of electrochemical fabrication for this protein narrowed the window of stability in pH and time when compared to previous stability studies reported for this protein...
  33. ncbi Coordinated synthesis of the two ClpB isoforms improves the ability of Escherichia coli to survive thermal stress
    I Ting Chow
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195, USA
    FEBS Lett 579:4235-41. 2005
    ..coli maintains the ClpB80 to ClpB95 ratio at a nearly constant value of 0.4-0.5 under a variety of stress conditions...
  34. pmc Just-in-time vaccines: Biomineralized calcium phosphate core-immunogen shell nanoparticles induce long-lasting CD8(+) T cell responses in mice
    Weibin Zhou
    Department of Chemical Engineering, University of Washington, Seattle, WA, USA
    Nanomedicine 10:571-8. 2014
    ..These results underscore the promise of immunogen-controlled adjuvant mineralization for just-in-time manufacturing of effective T cell vaccines...
  35. ncbi Stress-activated bioluminescent Escherichia coli sensors for antimicrobial agents detection
    Elyse Shapiro
    Department of Chemical Engineering, University of Washington, Box 351750, Seattle, WA 98195, USA
    J Biotechnol 132:487-93. 2007
    ....
  36. ncbi Molecular biomimetics: nanotechnology through biology
    Mehmet Sarikaya
    Materials Science and Engineering, University of Washington, Seattle, Washington 98195, USA
    Nat Mater 2:577-85. 2003
    ..Based on the three fundamental principles of molecular recognition, self-assembly and DNA manipulation, we highlight successful uses of GEPI in nanotechnology...
  37. pmc The 1.6-A crystal structure of the class of chaperones represented by Escherichia coli Hsp31 reveals a putative catalytic triad
    Paulene M Quigley
    Biomolecular Structure Center, P O Box 357742, University of Washington, Seattle, WA 98195, USA
    Proc Natl Acad Sci U S A 100:3137-42. 2003
    ..The structure-guided sequence alignment indicates that Hsp31 homologs can be divided in three classes based on variations in the P domain that dramatically affect both oligomerization and catalytic triad formation...
  38. ncbi Insertion mutagenesis of Escherichiacoli GroEL
    Danielle Amatore
    Department of Chemical Engineering, Box 351750, University of Washington, Seattle 98195 1750, USA
    Biochem Biophys Res Commun 302:246-52. 2003
    ..Nevertheless, GroEL34 did not fold as efficiently as authentic GroEL and reached only a heptameric conformation...