Robert Baertsch

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Retrocopy contributions to the evolution of the human genome
    Robert Baertsch
    Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA
    BMC Genomics 9:466. 2008
  2. pmc Aligning multiple genomic sequences with the threaded blockset aligner
    Mathieu Blanchette
    Howard Hughes Medical Institute, University of California at Santa Cruz, Santa Cruz, California 95064, USA
    Genome Res 14:708-15. 2004
  3. pmc Forces shaping the fastest evolving regions in the human genome
    Katherine S Pollard
    Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Genet 2:e168. 2006
  4. pmc Current status and new features of the Consensus Coding Sequence database
    Catherine M Farrell
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA, Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 42:D865-72. 2014
  5. pmc Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes
    W James Kent
    Center for Biomolecular Science and Engineering and Howard Hughes Medical Institute, Department of Computer Science, University of California, Santa Cruz, CA 95064, USA
    Proc Natl Acad Sci U S A 100:11484-9. 2003
  6. doi request reprint Using native and syntenically mapped cDNA alignments to improve de novo gene finding
    Mario Stanke
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA
    Bioinformatics 24:637-44. 2008
  7. pmc The structure of a rigorously conserved RNA element within the SARS virus genome
    Michael P Robertson
    The Center for the Molecular Biology of RNA, University of California, Santa Cruz, USA
    PLoS Biol 3:e5. 2005
  8. pmc The UCSC Archaeal Genome Browser
    Kevin L Schneider
    Biomolecular Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 34:D407-10. 2006
  9. ncbi request reprint A model for the proteolipid ring and bafilomycin/concanamycin-binding site in the vacuolar ATPase of Neurospora crassa
    Barry J Bowman
    Department of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064, USA
    J Biol Chem 281:31885-93. 2006

Collaborators

Detail Information

Publications9

  1. pmc Retrocopy contributions to the evolution of the human genome
    Robert Baertsch
    Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA
    BMC Genomics 9:466. 2008
    ..A subset of retroposed mRNAs (retrocopies) shows strong evidence of expression in primates, often yielding functional retrogenes...
  2. pmc Aligning multiple genomic sequences with the threaded blockset aligner
    Mathieu Blanchette
    Howard Hughes Medical Institute, University of California at Santa Cruz, Santa Cruz, California 95064, USA
    Genome Res 14:708-15. 2004
    ..We describe our use of MULTIZ to produce the whole-genome multiple alignments at the Santa Cruz Genome Browser...
  3. pmc Forces shaping the fastest evolving regions in the human genome
    Katherine S Pollard
    Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Genet 2:e168. 2006
    ..A combination of evolutionary forces has contributed to accelerated evolution of the fastest evolving elements in the human genome...
  4. pmc Current status and new features of the Consensus Coding Sequence database
    Catherine M Farrell
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA, Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 42:D865-72. 2014
    ..We also present a summary of recent and future curation targets. ..
  5. pmc Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes
    W James Kent
    Center for Biomolecular Science and Engineering and Howard Hughes Medical Institute, Department of Computer Science, University of California, Santa Cruz, CA 95064, USA
    Proc Natl Acad Sci U S A 100:11484-9. 2003
    ..To make these observations, we developed new alignment techniques that can handle large gaps in a robust fashion and discriminate between orthologous and paralogous alignments...
  6. doi request reprint Using native and syntenically mapped cDNA alignments to improve de novo gene finding
    Mario Stanke
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA
    Bioinformatics 24:637-44. 2008
    ..For many eukaryotic genomes, expressed sequence tags (ESTs) are available as evidence for genes. Related genomes that have been sequenced, annotated, and aligned to the target genome provide evidence of existence and structure of genes...
  7. pmc The structure of a rigorously conserved RNA element within the SARS virus genome
    Michael P Robertson
    The Center for the Molecular Biology of RNA, University of California, Santa Cruz, USA
    PLoS Biol 3:e5. 2005
    ....
  8. pmc The UCSC Archaeal Genome Browser
    Kevin L Schneider
    Biomolecular Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 34:D407-10. 2006
    ..We encourage submission of new experimental and bioinformatic analysis from contributors. The purpose of this tool is to aid biological discovery and facilitate greater collaboration within the archaeal research community...
  9. ncbi request reprint A model for the proteolipid ring and bafilomycin/concanamycin-binding site in the vacuolar ATPase of Neurospora crassa
    Barry J Bowman
    Department of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064, USA
    J Biol Chem 281:31885-93. 2006
    ..crassa sequence to the E. hirae structure and the degree to which the structural model predicts the clustering of these residues suggest that the folding of the bacterial and eukaryotic polypeptides is very similar...