Brian D Athey

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. pmc The NIH National Center for Integrative Biomedical Informatics (NCIBI)
    Brian D Athey
    Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA
    J Am Med Inform Assoc 19:166-70. 2012
  2. pmc High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics
    Mary Qu Yang
    National Human Genome Research Institute, National Institutes of Health NIH, U S Department of Health and Human Services, Bethesda, MD 20892, USA
    BMC Genomics 10:I1. 2009
  3. pmc Unified translation repression mechanism for microRNAs and upstream AUGs
    Subramanian S Ajay
    Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 11:155. 2010
  4. pmc 2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research
    Jack Y Yang
    Department of Radiation Oncology, Massachusetts General Hospital Cancer Center and Harvard Medical School, Boston, Massachusetts 02114, USA
    BMC Genomics 11:I1. 2010
  5. pmc Cross-domain neurobiology data integration and exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Genomics 11:S6. 2010
  6. pmc Open Biomedical Ontology-based Medline exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Bioinformatics 10:S6. 2009
  7. pmc Integrated metabolome and transcriptome analysis of the NCI60 dataset
    Gang Su
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Bioinformatics 12:S36. 2011
  8. pmc MiSearch adaptive pubMed search tool
    David J States
    Department of Human Genetics, National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 25:974-6. 2009
  9. pmc Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG)
    Inhan Lee
    Department of Psychiatry, University of Michigan, Ann Arbor, Bioinformatics Graduate Program, University of Michigan, Ann Arbor, MI 48109, USA
    Nucleic Acids Res 36:e27. 2008
  10. pmc Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
    Inhan Lee
    Michigan Center for Biological Information and Department of Psychiatry, University of Michigan, 3600 Green Court, Suite 700, Ann Arbor, MI 48105, USA
    Nucleic Acids Res 32:681-90. 2004

Research Grants

Collaborators

  • Gang Su
  • Inhan Lee
  • Zuoshuang Xiang
  • Yongqun He
  • Alla Karnovsky
  • Kim Eagle
  • David J States
  • Brian G Hoover
  • Jing Gao
  • Alan A Dombkowski
  • G S Omenn
  • Weijian Xuan
  • Jack Y Yang
  • Sirarat Sarntivijai
  • Subramanian S Ajay
  • Hamid R Arabnia
  • Youping Deng
  • Fan Meng
  • Jean Song
  • Manhong Dai
  • Stanley J Watson
  • Barbara Mirel
  • Mary Qu Yang
  • Andrew D Boyd
  • You Jung Kim
  • Howard Markel
  • Kerby A Shedden
  • Ruzena Bajcsy
  • Yunlong Liu
  • Joe C Zhang
  • Aidong Zhang
  • Andrzej Niemierko
  • A Keith Dunker
  • Dong Xu
  • Arif Ghafoor
  • Guo Zheng Li
  • Mark Borodovsky
  • Josh Buckner
  • Okan K Ersoy
  • Michelle Kaston
  • Dale A Hunscher
  • Jinghe Mao
  • Andrew H Sung
  • Bruce Rogers
  • Lee A Green
  • PAMELA HAYES
  • Paul R Saxman
  • John F Greden
  • Timothy D Morris
  • Daniel Clauw
  • Frederick Bayoff
  • Eva Kline-Rogers
  • Namrata Rajeev
  • Kevin A Smith
  • Qingzhong Liu
  • Andrew Boyd
  • Jignesh M Patel

Detail Information

Publications16

  1. pmc The NIH National Center for Integrative Biomedical Informatics (NCIBI)
    Brian D Athey
    Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA
    J Am Med Inform Assoc 19:166-70. 2012
    ..Our future directions include focusing on the TranSMART data sharing and analysis initiative...
  2. pmc High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics
    Mary Qu Yang
    National Human Genome Research Institute, National Institutes of Health NIH, U S Department of Health and Human Services, Bethesda, MD 20892, USA
    BMC Genomics 10:I1. 2009
    ..The theme of the conference to promote synergistic research and education has been achieved successfully...
  3. pmc Unified translation repression mechanism for microRNAs and upstream AUGs
    Subramanian S Ajay
    Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 11:155. 2010
    ..Separately, upstream AUGs (uAUGs) in 5'-UTRs are known to regulate genes translationally without affecting mRNA levels, one of the mechanisms for miRNA-mediated repression...
  4. pmc 2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research
    Jack Y Yang
    Department of Radiation Oncology, Massachusetts General Hospital Cancer Center and Harvard Medical School, Boston, Massachusetts 02114, USA
    BMC Genomics 11:I1. 2010
    ..Joydeep Ghosh (UT Austin), Dr. Aidong Zhang (Buffalo) and Dr. Zhi-Hua Zhou (Nanjing) for their significant contributions to the field of intelligent biological medicine...
  5. pmc Cross-domain neurobiology data integration and exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Genomics 11:S6. 2010
    ..However, existing solutions do not provide sufficient support for linking molecular level data to neuroanatomical structures, which is critical for understanding high level neurobiological functions...
  6. pmc Open Biomedical Ontology-based Medline exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Bioinformatics 10:S6. 2009
    ....
  7. pmc Integrated metabolome and transcriptome analysis of the NCI60 dataset
    Gang Su
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Bioinformatics 12:S36. 2011
    ....
  8. pmc MiSearch adaptive pubMed search tool
    David J States
    Department of Human Genetics, National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 25:974-6. 2009
    ..The user can optionally elect to include or exclude specific features and vary the importance of timeliness in the ranking...
  9. pmc Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG)
    Inhan Lee
    Department of Psychiatry, University of Michigan, Ann Arbor, Bioinformatics Graduate Program, University of Michigan, Ann Arbor, MI 48109, USA
    Nucleic Acids Res 36:e27. 2008
    ....
  10. pmc Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
    Inhan Lee
    Michigan Center for Biological Information and Department of Psychiatry, University of Michigan, 3600 Green Court, Suite 700, Ann Arbor, MI 48105, USA
    Nucleic Acids Res 32:681-90. 2004
    ....
  11. ncbi request reprint Correlations among angular wave component amplitudes in elastic multiple-scattering random media
    Brian G Hoover
    University of Michigan, Department of Electrical Engineering and Computer Science, Ann Arbor, Michigan 48109 2122, USA
    Phys Rev E Stat Nonlin Soft Matter Phys 65:026614. 2002
    ....
  12. pmc Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines
    Sirarat Sarntivijai
    National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI, USA
    PLoS ONE 7:e49941. 2012
    ..In addition, our meta-analysis found that all previously reported positive correlation between GBS and influenza vaccine immunization were based on trivalent influenza vaccines instead of monovalent influenza vaccines...
  13. pmc The University of Michigan Honest Broker: a Web-based service for clinical and translational research and practice
    Andrew D Boyd
    Department of Psychiatry, University of Michigan Depression Center, University of Michigan, Ann Arbor, MI 48109, USA
    J Am Med Inform Assoc 16:784-91. 2009
    ..The U-M Honest Broker delivered on the promise of using structured clinical knowledge shared among providers to help clinical and translational research...
  14. pmc GSearcher: agile attribute querying for biological networks
    Gang Su
    Bioinformatics Program, National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI, USA
    Bioinformatics 26:3138-9. 2010
    ..The user may either perform a quick search using keywords, phrases or regular expressions, or build a complex query with a group of filters for efficient and flexible exploration of large datasets...
  15. pmc Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
    Jing Gao
    National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 26:971-3. 2010
    ..AVAILABILITY: Metscape can be installed from within Cytoscape 2.6.x under 'Network and Attribute I/O' category. For more information, please visit http://metscape.ncibi.org/tryplugin.html...
  16. pmc miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST
    You Jung Kim
    Department of Electrical Engineering and Computer Science, University of Michigan Ann Arbor, MI 48109, USA
    Nucleic Acids Res 33:4335-44. 2005
    ..miBLAST employs the familiar BLAST statistical model and output format, guaranteeing the same accuracy as BLAST and facilitating a seamless transition for existing BLAST users...

Research Grants3

  1. National Center for Integrative Biomedical Informatics(RMI)
    Brian Athey; Fiscal Year: 2007
    ..The NCIBI Executive Committee will review and recruit new Driving Biological Projects (DBPs). The Center will be overseen by the Co-PIs and a professional project manager. ..