Hamid Ashrafi

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
    Hamid Ashrafi
    Seed Biotechnology Center, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA
    BMC Genomics 13:571. 2012
  2. pmc De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
    Massimo Iorizzo
    Department of Horticulture, University of Wisconsin, 1575 Linden Drive, Madison, WI 53706, USA
    BMC Genomics 12:389. 2011
  3. pmc Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip
    Theresa A Hill
    Seed Biotechnology Center, University of California Davis, Davis, California, United States of America
    PLoS ONE 8:e56200. 2013
  4. doi request reprint Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population
    Shawn C Yarnes
    Seed Biotechnology Center, University of California, Davis, CA 95616, USA
    Genome 56:61-74. 2013
  5. pmc Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
    Kevin Stoffel
    Seed Biotechnology Center, University of California Davis, CA 95616, USA
    BMC Genomics 13:185. 2012

Collaborators

  • Allen Van Deynze
  • Kevin Stoffel
  • Xinping Cui
  • Xiaoping Tan
  • Theresa A Hill
  • Shawn C Yarnes
  • Sebastian Reyes-Chin-Wo
  • Massimo Iorizzo
  • Jiqiang Yao
  • Alexander Kozik
  • María José Truco
  • Richard W Michelmore
  • Philipp W Simon
  • Pablo F Cavagnaro
  • Marta Matvienko
  • Dariusz Grzebelus
  • Megan Bowman
  • Douglas A Senalik

Detail Information

Publications5

  1. pmc De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
    Hamid Ashrafi
    Seed Biotechnology Center, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA
    BMC Genomics 13:571. 2012
    ..To complement and enhance these resources, we applied NGS to three pepper genotypes: Maor, Early Jalapeño and Criollo de Morelos-334 (CM334) to identify SNPs and SSRs in the assembly of these three genotypes...
  2. pmc De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
    Massimo Iorizzo
    Department of Horticulture, University of Wisconsin, 1575 Linden Drive, Madison, WI 53706, USA
    BMC Genomics 12:389. 2011
    ..The scope of this study was to develop a de novo assembly of carrot ESTs from multiple genotypes using the Illumina platform, and to identify polymorphisms...
  3. pmc Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip
    Theresa A Hill
    Seed Biotechnology Center, University of California Davis, Davis, California, United States of America
    PLoS ONE 8:e56200. 2013
    ..This research demonstrates the effectiveness of parallel high-throughput discovery and application of genome-wide transcript-based markers to assess genetic and genomic features among Capsicum annuum...
  4. doi request reprint Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population
    Shawn C Yarnes
    Seed Biotechnology Center, University of California, Davis, CA 95616, USA
    Genome 56:61-74. 2013
    ..Twenty-one loci showed correlation among seemingly unrelated phenotypic categories, highlighting tight linkage or shared genetics between previously unassociated traits in pepper...
  5. pmc Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
    Kevin Stoffel
    Seed Biotechnology Center, University of California Davis, CA 95616, USA
    BMC Genomics 13:185. 2012
    ....