Kimberly A Aeling

Summary

Affiliation: University of California
Country: USA

Publications

  1. ncbi DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions
    Kimberly A Aeling
    Department of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, 92697 3425, USA
    IEEE/ACM Trans Comput Biol Bioinform 4:117-25. 2007
  2. ncbi Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy
    Kimberly A Aeling
    Institute for Genomics and Bioinformatics, Department of Microbiology and Molecular Genetics, School of Medicine, University of California 92697, USA
    J Biol Chem 281:39236-48. 2006
  3. ncbi Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface
    Donald F Senear
    Department of Molecular Biology and Biochemistry, College of Medicine, University of California, Irvine, CA 92697, USA
    Nucleic Acids Res 35:1761-72. 2007
  4. ncbi Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism
    Michael L Opel
    Department of Microbiology and Molecular Genetics, College of Medicine, University of California, Irvine, CA 92697, USA
    Mol Microbiol 53:665-74. 2004
  5. ncbi A vector set for systematic metabolic engineering in Saccharomyces cerevisiae
    Fang Fang
    Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA, USA
    Yeast 28:123-36. 2011

Collaborators

Detail Information

Publications5

  1. ncbi DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions
    Kimberly A Aeling
    Department of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, 92697 3425, USA
    IEEE/ACM Trans Comput Biol Bioinform 4:117-25. 2007
    ..Deformation energy may also have a predictive capacity for the underlying catalytic mechanism of DNA-binding enzymes...
  2. ncbi Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy
    Kimberly A Aeling
    Institute for Genomics and Bioinformatics, Department of Microbiology and Molecular Genetics, School of Medicine, University of California 92697, USA
    J Biol Chem 281:39236-48. 2006
    ....
  3. ncbi Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface
    Donald F Senear
    Department of Molecular Biology and Biochemistry, College of Medicine, University of California, Irvine, CA 92697, USA
    Nucleic Acids Res 35:1761-72. 2007
    ..Biol. 310, 379-401, 2001). We propose that the volume changes reflect differences in hydration that arise from structural variation at IHF-DNA interfaces while the resulting energetic compensation maintains the same net binding energy...
  4. ncbi Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism
    Michael L Opel
    Department of Microbiology and Molecular Genetics, College of Medicine, University of California, Irvine, CA 92697, USA
    Mol Microbiol 53:665-74. 2004
    ....
  5. ncbi A vector set for systematic metabolic engineering in Saccharomyces cerevisiae
    Fang Fang
    Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA, USA
    Yeast 28:123-36. 2011
    ..Together these vectors and expression loci will facilitate combinatorial gene expression for metabolic engineering...