Alper Yilmaz

Summary

Affiliation: The Ohio State University
Country: USA

Publications

  1. pmc Coordinate enhancement of transgene transcription and translation in a lentiviral vector
    Alper Yilmaz
    Center for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, OH 43210, USA
    Retrovirology 3:13. 2006
  2. pmc The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
  3. doi request reprint Components and mechanisms of regulation of gene expression
    Alper Yilmaz
    Plant Biotechnology Center and Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, OH, USA
    Methods Mol Biol 674:23-32. 2010
  4. pmc AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
    Alper Yilmaz
    Department of Plant Cellular and Molecular Biology and Plant Biotechnology Center, The Ohio State University, Columbus, OH, USA
    Nucleic Acids Res 39:D1118-22. 2011
  5. pmc RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1
    Cheryl Bolinger
    Center for Retrovirus Research, The Ohio State University, Columbus, OH 43210 1093, USA
    Nucleic Acids Res 35:2629-42. 2007
  6. pmc GRASSIUS: a platform for comparative regulatory genomics across the grasses
    Alper Yilmaz
    Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, Ohio 43210, USA
    Plant Physiol 149:171-80. 2009
  7. pmc Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets
    Daniel Arango
    Molecular Cellular and Developmental Biology Graduate Program, Division of Pulmonary, The Ohio State University, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 110:E2153-62. 2013
  8. pmc A genome-wide regulatory framework identifies maize pericarp color1 controlled genes
    Kengo Morohashi
    Department of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA
    Plant Cell 24:2745-64. 2012
  9. ncbi request reprint Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1
    Alper Yilmaz
    Center for Retrovirus Research, The Ohio State University, Columbus, OH 43210, USA
    Curr HIV Res 4:131-9. 2006
  10. pmc Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity
    Amit Sharma
    Department of Veterinary Biosciences, Ohio State University, Columbus, Ohio, United States of America
    PLoS Pathog 8:e1002612. 2012

Collaborators

Detail Information

Publications10

  1. pmc Coordinate enhancement of transgene transcription and translation in a lentiviral vector
    Alper Yilmaz
    Center for Retrovirus Research, Department of Veterinary Biosciences, The Ohio State University, Columbus, OH 43210, USA
    Retrovirology 3:13. 2006
    ....
  2. pmc The word landscape of the non-coding segments of the Arabidopsis thaliana genome
    Jens Lichtenberg
    Bioinformatics Laboratory, School of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA
    BMC Genomics 10:463. 2009
    ..The frequencies and positional distributions of these words within particular non-coding genomic segments provide important insights into how the words function in processes such as mRNA stability and regulation of gene expression...
  3. doi request reprint Components and mechanisms of regulation of gene expression
    Alper Yilmaz
    Plant Biotechnology Center and Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, OH, USA
    Methods Mol Biol 674:23-32. 2010
    ....
  4. pmc AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
    Alper Yilmaz
    Department of Plant Cellular and Molecular Biology and Plant Biotechnology Center, The Ohio State University, Columbus, OH, USA
    Nucleic Acids Res 39:D1118-22. 2011
    ..All the information in AGRIS is publicly available and downloadable upon registration...
  5. pmc RNA helicase A interacts with divergent lymphotropic retroviruses and promotes translation of human T-cell leukemia virus type 1
    Cheryl Bolinger
    Center for Retrovirus Research, The Ohio State University, Columbus, OH 43210 1093, USA
    Nucleic Acids Res 35:2629-42. 2007
    ..We speculate divergent retroviruses have evolved a convergent RNA-protein interaction to modulate translation of their highly structured mRNA...
  6. pmc GRASSIUS: a platform for comparative regulatory genomics across the grasses
    Alper Yilmaz
    Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, Ohio 43210, USA
    Plant Physiol 149:171-80. 2009
    ..The integration of GrassTFDB and GrassPROMDB will be accomplished through GrassRegNet as a first step in representing the architecture of grass regulatory networks. GRASSIUS can be accessed from www.grassius.org...
  7. pmc Molecular basis for the action of a dietary flavonoid revealed by the comprehensive identification of apigenin human targets
    Daniel Arango
    Molecular Cellular and Developmental Biology Graduate Program, Division of Pulmonary, The Ohio State University, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 110:E2153-62. 2013
    ....
  8. pmc A genome-wide regulatory framework identifies maize pericarp color1 controlled genes
    Kengo Morohashi
    Department of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA
    Plant Cell 24:2745-64. 2012
    ....
  9. ncbi request reprint Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1
    Alper Yilmaz
    Center for Retrovirus Research, The Ohio State University, Columbus, OH 43210, USA
    Curr HIV Res 4:131-9. 2006
    ..We discuss key issues that remain to be understood and suggest parameters to validate internal initiation activity in HIV-1 and other retroviruses...
  10. pmc Thriving under stress: selective translation of HIV-1 structural protein mRNA during Vpr-mediated impairment of eIF4E translation activity
    Amit Sharma
    Department of Veterinary Biosciences, Ohio State University, Columbus, Ohio, United States of America
    PLoS Pathog 8:e1002612. 2012
    ..We speculate that a subset of CBP80-bound cellular mRNAs contribute to recovery from significant cellular stress, including human retrovirus infection...