Xiaoping Su

Summary

Affiliation: The University of Texas
Country: USA

Publications

  1. pmc PurityEst: estimating purity of human tumor samples using next-generation sequencing data
    Xiaoping Su
    Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
    Bioinformatics 28:2265-6. 2012
  2. pmc VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue
    Yunxin Chen
    Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
    Bioinformatics 29:266-7. 2013

Collaborators

Detail Information

Publications2

  1. pmc PurityEst: estimating purity of human tumor samples using next-generation sequencing data
    Xiaoping Su
    Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
    Bioinformatics 28:2265-6. 2012
    ..We applied our tool to a whole cancer genome sequencing datasets and demonstrated the accuracy of PurityEst compared with DNA copy number-based estimation...
  2. pmc VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue
    Yunxin Chen
    Department of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
    Bioinformatics 29:266-7. 2013
    ..Using these data, we showed that VirusSeq accurately detects the known viruses and their integration sites with high sensitivity and specificity. VirusSeq can also perform this function using whole-genome sequencing data of human tissue...