Mark R Southern

Summary

Affiliation: The Scripps Research Institute
Country: USA

Publications

  1. pmc The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data
    B D Pascal
    Translational Research Institute, The Scripps Research Institute Scripps Florida, Jupiter, FL 33458, USA
    BMC Bioinformatics 8:156. 2007
  2. pmc A Java API for working with PubChem datasets
    Mark R Southern
    Translational Research Institute and Molecular Therapeutics, The Scripps Research Institute, Scripps Florida, Jupiter, FL 33458, USA
    Bioinformatics 27:741-2. 2011
  3. pmc Improved crystallographic structures using extensive combinatorial refinement
    Jerome C Nwachukwu
    Department of Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, USA
    Structure 21:1923-30. 2013
  4. pmc PubChem promiscuity: a web resource for gathering compound promiscuity data from PubChem
    Stephanie A Canny
    Translational Research Institute and Molecular Therapeutics, The Scripps Research Institute, Scripps Florida, 130 Scripps Way, Jupiter, FL 33458, USA
    Bioinformatics 28:140-1. 2012

Collaborators

  • Pavel V Afonine
  • Thomas C Terwilliger
  • Jerome C Nwachukwu
  • Stephanie A Canny
  • B D Pascal
  • James R Kiefer
  • Paul D Adams
  • Kendall W Nettles
  • Yasel Cruz
  • Patrick R Griffin
  • M J Chalmers
  • P R Griffin
  • S A Busby
  • N F Tsinoremas
  • C C Mader

Detail Information

Publications4

  1. pmc The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data
    B D Pascal
    Translational Research Institute, The Scripps Research Institute Scripps Florida, Jupiter, FL 33458, USA
    BMC Bioinformatics 8:156. 2007
    ..To date there is no software for the analysis of H/D exchange data that comprehensively addresses these issues...
  2. pmc A Java API for working with PubChem datasets
    Mark R Southern
    Translational Research Institute and Molecular Therapeutics, The Scripps Research Institute, Scripps Florida, Jupiter, FL 33458, USA
    Bioinformatics 27:741-2. 2011
    ..It is not intended as an end user tool but to provide a platform for further automation and tools development...
  3. pmc Improved crystallographic structures using extensive combinatorial refinement
    Jerome C Nwachukwu
    Department of Cancer Biology, The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458, USA
    Structure 21:1923-30. 2013
    ..ExCoR thus provides a simple approach to improving structure determination. ..
  4. pmc PubChem promiscuity: a web resource for gathering compound promiscuity data from PubChem
    Stephanie A Canny
    Translational Research Institute and Molecular Therapeutics, The Scripps Research Institute, Scripps Florida, 130 Scripps Way, Jupiter, FL 33458, USA
    Bioinformatics 28:140-1. 2012
    ..It is a Java servlet that uses NCBI Entrez (eUtils) web services to interact with PubChem and provide promiscuity counts in a variety of categories along with compound descriptors, including PAINS-based functional group detection...