Mihai Pop

Summary

Affiliation: The Institute for Genomic Research
Country: USA

Publications

  1. pmc Genome assembly forensics: finding the elusive mis-assembly
    Adam M Phillippy
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
    Genome Biol 9:R55. 2008
  2. pmc Hierarchical scaffolding with Bambus
    Mihai Pop
    The Institute for Genomic Research TIGR, Rockville, Maryland 20850, USA
    Genome Res 14:149-59. 2004
  3. ncbi request reprint Comparative genome assembly
    Mihai Pop
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Brief Bioinform 5:237-48. 2004
  4. ncbi request reprint The dog genome: survey sequencing and comparative analysis
    Ewen F Kirkness
    The Institute for Genomic Research, Rockville, MD 20850, USA
    Science 301:1898-903. 2003
  5. pmc Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
    Steven L Salzberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Genome Biol 6:R23. 2005
  6. pmc Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
    Steven L Salzberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Genome Biol 6:402. 2005
  7. ncbi request reprint The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
    Najib M El-Sayed
    Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA
    Science 309:409-15. 2005
  8. pmc Metagenomic analysis of the human distal gut microbiome
    Steven R Gill
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 312:1355-9. 2006
  9. ncbi request reprint Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
    Timothy D Read
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
    Science 296:2028-33. 2002
  10. ncbi request reprint The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
    Timothy D Read
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nature 423:81-6. 2003

Detail Information

Publications20

  1. pmc Genome assembly forensics: finding the elusive mis-assembly
    Adam M Phillippy
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
    Genome Biol 9:R55. 2008
    ..The software described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net...
  2. pmc Hierarchical scaffolding with Bambus
    Mihai Pop
    The Institute for Genomic Research TIGR, Rockville, Maryland 20850, USA
    Genome Res 14:149-59. 2004
    ..Bambus is available as an open-source package from our Web site...
  3. ncbi request reprint Comparative genome assembly
    Mihai Pop
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Brief Bioinform 5:237-48. 2004
    ..The software is available as part of the open-source AMOS project...
  4. ncbi request reprint The dog genome: survey sequencing and comparative analysis
    Ewen F Kirkness
    The Institute for Genomic Research, Rockville, MD 20850, USA
    Science 301:1898-903. 2003
    ..A variety of polymorphic elements are identified that will be valuable for mapping the genetic basis of diseases and traits in the dog...
  5. pmc Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
    Steven L Salzberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Genome Biol 6:R23. 2005
    ....
  6. pmc Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species
    Steven L Salzberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Genome Biol 6:402. 2005
    ..A correction to Serendipitous discovery of Wolbachia genomes in multiple Drosophila species by SL Salzberg, JC Dunning Hotopp, AL Delcher, M Pop, DR Smith, MB Eisen and WC Nelson. Genome Biology 2005, 6:R23...
  7. ncbi request reprint The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
    Najib M El-Sayed
    Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA
    Science 309:409-15. 2005
    ....
  8. pmc Metagenomic analysis of the human distal gut microbiome
    Steven R Gill
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 312:1355-9. 2006
    ..Thus, humans are superorganisms whose metabolism represents an amalgamation of microbial and human attributes...
  9. ncbi request reprint Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
    Timothy D Read
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
    Science 296:2028-33. 2002
    ..These results demonstrate that genome-based analysis of microbial pathogens will provide a powerful new tool for investigation of infectious disease outbreaks...
  10. ncbi request reprint The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
    Timothy D Read
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nature 423:81-6. 2003
    ..The complete sequence of B. anthracis is a step towards a better understanding of anthrax pathogenesis...
  11. ncbi request reprint Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
    Jane M Carlton
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nature 419:512-9. 2002
    ..This is the first genome sequence of a model eukaryotic parasite, and it provides insight into the use of such systems in the modelling of Plasmodium biology and disease...
  12. ncbi request reprint The genome of the protist parasite Entamoeba histolytica
    Brendan Loftus
    TIGR, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nature 433:865-8. 2005
    ..Analysis of the genome provides new insights into the workings and genome evolution of a major human pathogen...
  13. ncbi request reprint Using the TIGR assembler in shotgun sequencing projects
    Mihai Pop
    Institute for Genomic Research, Rockville, MD, USA
    Methods Mol Biol 255:279-94. 2004
  14. pmc Bioinformatics challenges of new sequencing technology
    Mihai Pop
    Center for Bioinformatics and Computational Biology, University of Maryland, MD 20742, USA
    Trends Genet 24:142-9. 2008
    ....
  15. pmc Figaro: a novel statistical method for vector sequence removal
    James Robert White
    Center for Bioinformatics and Computational Biology, University of Maryland College Park, MD 20742, USA
    Bioinformatics 24:462-7. 2008
    ..Correct clipping information is essential to scientists attempting to validate, improve and even finish the increasingly large number of genomes released at a 'draft' quality level...
  16. ncbi request reprint Evolution of genes and genomes on the Drosophila phylogeny
    Andrew G Clark
    Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA
    Nature 450:203-18. 2007
    ..These may prove to underlie differences in the ecology and behaviour of these diverse species...
  17. pmc Scaffolding and validation of bacterial genome assemblies using optical restriction maps
    Niranjan Nagarajan
    University of Maryland, College Park, MD 20742, USA
    Bioinformatics 24:1229-35. 2008
    ..In this article we propose methods to overcome such limitations by incorporating information from optical restriction maps...
  18. pmc Minimus: a fast, lightweight genome assembler
    Daniel D Sommer
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
    BMC Bioinformatics 8:64. 2007
    ..Many of the most common uses of assemblers, however, are best served by a simpler type of assembler that requires fewer software components, uses less memory, and is far easier to install and run...
  19. ncbi request reprint An optimized system for expression and purification of secreted bacterial proteins
    Brian V Geisbrecht
    Division of Cell Biology and Biophysics, School of Biological Sciences, University of Missouri Kansas City, 5100 Rockhill Road, Kansas City, MO 64110, USA
    Protein Expr Purif 46:23-32. 2006
    ..V. Geisbrecht, B.Y. Hamaoka, B. Perman, A. Zemla, D.J. Leahy, J. Biol. Chem. 280 (2005) 17243-17250)...
  20. ncbi request reprint Characterization of Ehp, a secreted complement inhibitory protein from Staphylococcus aureus
    Michal Hammel
    School of Biological Sciences, University of Missouri Kansas City, Kansas City, Missouri 64110, USA
    J Biol Chem 282:30051-61. 2007
    ..Our results suggest that increased inhibitory potency of Ehp relative to Efb-C is derived from the second C3-binding site in this new protein...