Research Topics
| M PeregoSummaryAffiliation: The Scripps Research Institute Country: USA Publications
Research Grants
| Collaborators
|
Detail Information
Publications
Forty years in the making: understanding the molecular mechanism of peptide regulation in bacterial developmentMarta Perego
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California, United States of America
PLoS Biol 11:e1001516. 2013..The results invite speculation regarding the potential exploitation of this module as a molecular tool for applications in therapeutic design and biotechnology...
Bacillus subtilis RapA phosphatase domain interaction with its substrate, phosphorylated Spo0F, and its inhibitor, the PhrA peptideAlejandra R Diaz
The Scripps Research Institute, Department of Molecular and Experimental Medicine, La Jolla, California, USA
J Bacteriol 194:1378-88. 2012....
Rap phosphatase of virulence plasmid pXO1 inhibits Bacillus anthracis sporulationCristina Bongiorni
Division of Cellular Biology, Mail Code MEM 116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037
J Bacteriol 188:487-98. 2006..anthracis, one of which, BA3790-3791, also affected sporulation initiation. The results suggest that the plasmid-borne Rap-Phr system may provide a selective advantage to the virulence of B. anthracis...
Commingling regulatory systems following acquisition of virulence plasmids by Bacillus anthracisMarta Perego
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Trends Microbiol 16:215-21. 2008..An example of such a conversion is seen in Bacillus anthracis, and how acquired plasmid regulatory functions affect the activity of the regulatory processes of the bacterium, and vice versa, is now being revealed...
Functional genomics of gram-positive microorganismsMarta Perego
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 186:903-9. 2004
A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilisM Perego
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA
Mol Microbiol 42:133-43. 2001..Negative signals interpreted by aspartyl phosphate phosphatases appear to be a common mechanism in Gram-positive spore-forming microorganisms...
Kinase-phosphatase competition regulates Bacillus subtilis developmentM Perego
Dept of Molecular and Experimental Medicine, Scripps Research Institute, La Jolla, CA 92037, USA
Trends Microbiol 6:366-70. 1998....
Protein aspartate phosphatases control the output of two-component signal transduction systemsM Perego
Department of Molecular and Experimental Medicine, Scripps Research Institute, La Jolla, CA 92037, USA
Trends Genet 12:97-101. 1996..Such phosphatases are prevalent in signal transduction systems controlling complex processes, such as the initiation of development in microorganisms...
Pentapeptide regulation of aspartyl-phosphate phosphatasesM Perego
Division of Cellular Biology, Department of Molecular and Experimental Medicine, MEM 116, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Peptides 22:1541-7. 2001..The identification of tetratricopeptide repeats in the Rap proteins may explain the mechanism by which Phr peptides bind to and inhibit the activity of Rap phosphatases...
A novel histidine kinase inhibitor regulating development in Bacillus subtilisL Wang
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
Genes Dev 11:2569-79. 1997....
ScoC regulates peptide transport and sporulation initiation in Bacillus subtilisA Koide
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 181:4114-7. 1999..Since peptide transport is essential for inactivation of the negative regulation of sporulation by Rap phosphatases, the control of ScoC transcription repression activity plays a crucial role in the initiation of sporulation...
Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilisM Perego
Division of Cellular Biology, Research Institute of Scripps Clinic, La Jolla, California 92037
Mol Microbiol 2:689-99. 1988..The level of this regulator is, in turn, controlled by the spo0A gene. The pleiotropic phenotypes of spo0A mutants result from uncontrolled overexpression of the abrB regulator...
Characterization of the gene for a protein kinase which phosphorylates the sporulation-regulatory proteins Spo0A and Spo0F of Bacillus subtilisM Perego
Department of Molecular and Experimental Medicine, Research Institute of Scripps Clinic, La Jolla, California 92037
J Bacteriol 171:6187-96. 1989..The results suggest that multiple kinases exist for the Spo0A protein...
Dissection of the functional and structural domains of phosphorelay histidine kinase A of Bacillus subtilisL Wang
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 183:2795-802. 2001..The N-terminal region appears to be essential both for signal sensing and for maintaining the correct conformation of the autokinase component domains...
A peptide export-import control circuit modulating bacterial development regulates protein phosphatases of the phosphorelayM Perego
Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037
Proc Natl Acad Sci U S A 94:8612-7. 1997..Chromosome sequencing has revealed several other phosphatase-prepeptide gene pairs in B. subtilis, suggesting that the use of this mechanism may be widespread in signal transduction...
Isolation and sequence of the spo0E gene: its role in initiation of sporulation in Bacillus subtilisM Perego
Division of Cellular Biology, Research Insititute of Scripps Clinic, La Jolla, CA 92037
Mol Microbiol 1:125-32. 1987..Studies of the regulation of this gene have allowed the generation of a hypothesis to explain the interactions of those five stage 0 genes involved in the activation of sporulation-specific transcription...
The transition state transcription regulator abrB of Bacillus subtilis is a DNA binding proteinM A Strauch
Department of Basic and Clinical Research, Research Institute of Scripps Clinic, La Jolla, CA 92037
EMBO J 8:1615-21. 1989..The results suggested that stationary phase functions and sporulation are repressed during active growth by AbrB and other transition state regulators by binding to the affected promoters in a concentration-dependent manner...
Sensor domains encoded in Bacillus anthracis virulence plasmids prevent sporulation by hijacking a sporulation sensor histidine kinaseAndrea K White
Division of Cellular Biology, Mail Code MEM-116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 188:6354-60. 2006..anthracis sporulation in the bloodstream of its infected host, a salient characteristic in the virulence of this organism, and provides an additional role for the virulence plasmids in anthrax pathogenesis...
Sequence analysis and regulation of the hpr locus, a regulatory gene for protease production and sporulation in Bacillus subtilisM Perego
Department of Basic and Clinical Research, Research Institute of Scripps Clinic, La Jolla, California 92037
J Bacteriol 170:2560-7. 1988..The results are consistent with the view that the spoOA gene may control sporulation and transcription by modulating the level and activity of several regulatory proteins...
A free terminal carboxylate group is required for PhrA pentapeptide inhibition of RapA phosphataseL J Core
Division of Cellular Biology, Department of Molecular and Experimental Medicine, MEM-116, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Peptides 22:1549-53. 2001..Therefore, coordination of the terminal carboxylate group appears to be critical for peptide binding to RapA...
The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulationM Perego
Department of Molecular and Experimental Medicine, Research Institute of Scripps Clinic, La Jolla, California 92037
Mol Microbiol 5:173-85. 1991..We postulate that the accumulation of such peptides may play a signalling role in the initiation of sporulation, and that the sporulation defect in opp mutants results from an inability to transport these peptides...
Overexpression of the PepF oligopeptidase inhibits sporulation initiation in Bacillus subtilisKyoko Kanamaru
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 184:43-50. 2002..The function of PepF in B. subtilis remains unknown. Limited experiments with a yjbG paralogue called yusX indicated that a frameshift is present, making the corresponding gene product inactive...
Synergistic regulation of competence development in Bacillus subtilis by two Rap-Phr systemsCristina Bongiorni
Division of Cellular Biology, Mail Code MEM-116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 187:4353-61. 2005..Since the transcription of the RapC- and RapF-encoding genes is positively regulated by their own target ComA, an autoregulatory circuit must exist for the competence transcription factor in order to modulate its activity...
Opposing effects of histidine phosphorylation regulate the AtxA virulence transcription factor in Bacillus anthracisBillyana Tsvetanova
The Scripps Research Institute, Department of Molecular and Experimental Medicine, Division of Cellular Biology, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Mol Microbiol 63:644-55. 2007..Our results link virulence factor production in B. anthracis to carbohydrate metabolism and, for the first time, provide a mechanistic explanation for AtxA transcriptional activity...
Two small c-type cytochromes affect virulence gene expression in Bacillus anthracisAdam C Wilson
The Scripps Research Institute, Department of Molecular and Experimental Medicine, Division of Cellular Biology, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Mol Microbiol 72:109-23. 2009..These findings are significant not only to virulence regulation in B. anthracis, but also to analysis of virulence regulation in many pathogenic bacteria and to the study of cytochrome c activity in Gram-positive bacteria...
Dual promoters control expression of the Bacillus anthracis virulence factor AtxACristina Bongiorni
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 190:6483-92. 2008..The dual promoter activity and the extended untranslated mRNA suggest that as-yet-unknown regulatory mechanisms may act on this region to influence the level of AtxA in the cell...
Negative regulation of Bacillus anthracis sporulation by the Spo0E family of phosphatasesCristina Bongiorni
Division of Cellular Biology, Mail Code MEM 116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 189:2637-45. 2007..J. Biol. Chem. 281:37993-38003, 2006). We propose that these proteins may contribute to maintain B. anthracis in the transition phase of growth during an active infection and therefore contribute to the virulence of this organism...
Virulence gene expression is independent of ResDE-regulated respiration control in Bacillus anthracisAdam C Wilson
Department of Molecular and Experimental Medicine, Division of Cellular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA
J Bacteriol 190:5522-5. 2008..The results indicate that the loss of ResDE-controlled respiratory capacity does not affect the synthesis of anthrax toxin...
Functional role for a conserved aspartate in the Spo0E signature motif involved in the dephosphorylation of the Bacillus subtilis sporulation regulator Spo0AAlejandra R Diaz
Department of Molecular and Experimental Medicine, Division of Cellular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Biol Chem 283:2962-72. 2008..S., and Dijkstra, B. W. (1999) Biochem. J. 339, 223-226 )...
New transposon delivery plasmids for insertional mutagenesis in Bacillus anthracisAdam C Wilson
The Scripps Research Institute, Department of Molecular and Experimental, Medicine, Division of Cellular Biology, 10550 North Torrey Pines Road, La Jolla, CA 92037, United States
J Microbiol Methods 71:332-5. 2007..The utility of both systems was directly demonstrated through the mutagenesis of a widely used B. anthracis strain...
A unique GTP-dependent sporulation sensor histidine kinase in Bacillus anthracisFrancesca Scaramozzino
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 191:687-92. 2009....
The bicarbonate transporter is essential for Bacillus anthracis lethalityAdam C Wilson
Department of Molecular and Experimental Medicine, Division of Cellular Biology, The Scripps Research Institute, La Jolla, California, United States of America
PLoS Pathog 4:e1000210. 2008....
YycH regulates the activity of the essential YycFG two-component system in Bacillus subtilisHendrik Szurmant
Division of Cellular Biology, Mail Code MEM 116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 187:5419-26. 2005....
Molecular analysis of Phr peptide processing in Bacillus subtilisSophie Stephenson
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 185:4861-71. 2003..subtilis (SipS, SipT, SipU, SipV, and SipW) are indispensable for Phr processing. However, we show that SipV and SipT have a previously undescribed role in sporulation, competence, and cell growth...
The Enterococcus faecalis fsr two-component system controls biofilm development through production of gelatinaseLynn E Hancock
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Bacteriol 186:5629-39. 2004....
TPR-mediated interaction of RapC with ComA inhibits response regulator-DNA binding for competence development in Bacillus subtilisLeighton Core
Division of Cellular Biology, Department of Molecular and Experimental Medicine, MEM-116, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Mol Microbiol 49:1509-22. 2003..The RapC mechanism of regulating ComA activity is a new example of how TPR motifs and their structural organization have been adapted for different specific functions within the B. subtilis Rap family...
Interaction surface of the Spo0A response regulator with the Spo0E phosphataseSophie J Stephenson
Division of Cellular Biology, Department of Molecular and Experimental Medicine, MEM-116, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Mol Microbiol 44:1455-67. 2002..The residues involved in Spo0E interaction are identical in all Spo0A orthologues from spore-forming Bacilli encoding Spo0E phosphatases...
A sensor histidine kinase co-ordinates cell wall architecture with cell division in Bacillus subtilisTatsuya Fukushima
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA
Mol Microbiol 69:621-32. 2008....
Structure and lytic activity of a Bacillus anthracis prophage endolysinLieh Yoon Low
Infectious and Inflammatory Disease Center, The Burnham Institute, La Jolla, California 92037, USA
J Biol Chem 280:35433-9. 2005..These results may have broad implications for the design of endolysins as therapeutic agents...
Characterization of sporulation histidine kinases of Bacillus anthracisRyan L Brunsing
Division of Cellular Biology, Mail Code MEM-116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 187:6972-81. 2005..The sporulation of B. anthracis ex vivo appears to result from any one or a combination of the sporulation sensor histidine kinases remaining...
Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B₁₂ riboswitch contribute to ethanolamine utilization in Enterococcus faecalisKris Ann Baker
The Scripps Research Institute, Department of Molecular and Experimental Medicine, La Jolla, California 92037, USA
J Bacteriol 193:2575-86. 2011....
Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpAChristina Chiang
Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, MEM 116, La Jolla, California 92037, USA
J Bacteriol 193:52-62. 2011..The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis...
Enterococcus faecalis virulence regulator FsrA binding to target promotersMaria Florencia Del Papa
The Scripps Research Institute, Department of Molecular and Experimental Medicine, Mail Code MEM 116, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 193:1527-32. 2011..In this study, we demonstrated that FsrA also binds to two imperfect direct repeats separated by 13 bp, based on the consensus sequence of FsrA, T/AT/CAA/GGGAA/G, which is consistent with the binding characteristics of LytTR domains...
Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptideShu Ishikawa
Division of Cellular Biology, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Biol Chem 277:20483-9. 2002..The structural organization of Rap phosphatases in tetratricopeptide repeats provides insights on the mechanisms of RapA interaction with its substrate and its inhibitor...
Ethanolamine activates a sensor histidine kinase regulating its utilization in Enterococcus faecalisMaria Florencia Del Papa
Division of Cellular Biology, Mail Code MEM 116, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
J Bacteriol 190:7147-56. 2008..These results assign a role to the RR-HK17 TCS as coordinator of the enterococcal response to specific nutritional conditions existing at the site of bacterial invasion, the intestinal tract of an animal host...
Functional roles of four conserved charged residues in the membrane domain subunit NuoA of the proton-translocating NADH-quinone oxidoreductase from Escherichia coliMou Chieh Kao
Division of Biochemistry, Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, California 92037, USA
J Biol Chem 279:32360-6. 2004..The possible functional roles of residues Asp-79 and Glu-81 were discussed...
Structural characterization of Spo0E-like protein-aspartic acid phosphatases that regulate sporulation in bacilliRosa Grenha
Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5YW, United Kingdom
J Biol Chem 281:37993-8003. 2006..The implications of the structures for interactions between the phosphatases and their substrate Spo0A approximately P are discussed...
Temporal separation of distinct differentiation pathways by a dual specificity Rap-Phr system in Bacillus subtilisWiep Klaas Smits
Groningen Biomolecular Sciences and Biotechnology Institute, Department of Genetics, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands
Mol Microbiol 65:103-20. 2007..Together, these results indicate that RapH is an integral part of a multifactorial regulatory circuit affecting the cell's decision between distinct developmental pathways...
Characterization of the parB-like yyaA gene of Bacillus subtilisJörg Sievers
Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, United Kingdom
J Bacteriol 184:1102-11. 2002..Overexpression of yyaA caused a sporulation defect characterized by the formation of multiple septa within the cell. This phenotype indicates that YyaA may have a regulatory role at the onset of sporulation...
Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilisLucia Musumeci
The Institute for Genetic Medicine, University of Southern California, Los Angeles, 90033, USA
J Bacteriol 187:4945-56. 2005..Our study suggests that YfkJ and YwlE play roles in B. subtilis stress resistance...
Research Grants
- Signal Transduction in EnterococciMarta Perego; Fiscal Year: 2007....
- Protein Aspartate Phosphatases in DevelopmentMarta Perego; Fiscal Year: 2006..The role of the Rap phosphatases not involved in sporulation will be investigated by microbiological and genetic approaches ..
- Protein Aspartate Phosphatases in DevelopmentMarta Perego; Fiscal Year: 2003..The role of the Rap phosphatases not involved in sporulation will be investigated by microbiological and genetic approaches ..
- PROTEIN ASPARATE PHOSPHATASES IN DEVELOPMENTMarta Perego; Fiscal Year: 2002..The mechanisms of interaction of RapA with SpoOF will be studied by the surface plasmon resonance method and with a genetic approach. Genetic and biochemical approaches will be used for the identification of the target of RapC. ..
