Daniel A Janies

Summary

Affiliation: The Ohio State University
Country: USA

Publications

  1. pmc Selection for resistance to oseltamivir in seasonal and pandemic H1N1 influenza and widespread co-circulation of the lineages
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, College of Medicine, Columbus, OH 43210, USA
    Int J Health Geogr 9:13. 2010
  2. doi request reprint Echinoderm phylogeny including Xyloplax, a progenetic asteroid
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 West 10th Avenue, Columbus, OH 43210, USA
    Syst Biol 60:420-38. 2011
  3. doi request reprint Genome informatics of influenza A: from data sharing to shared analytical capabilities
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, Columbus, 43210, USA
    Anim Health Res Rev 11:73-9. 2010
  4. ncbi request reprint Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)
    Daniel Janies
    Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W 10th Ave, Columbus, Ohio 43210 1239, USA
    Syst Biol 56:321-9. 2007
  5. pmc CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome
    Ann L Griffen
    Division of Pediatric Dentistry, College of Dentistry, The Ohio State University, Columbus, Ohio, United States of America
    PLoS ONE 6:e19051. 2011
  6. doi request reprint Reassortment networks for investigating the evolution of segmented viruses
    Shahid H Bokhari
    Department of Biomedical Informatics, Ohio State University, 3190 Graves Hall, 333 W 10th Ave Columbus, OH 43210, USA
    IEEE/ACM Trans Comput Biol Bioinform 7:288-98. 2010
  7. doi request reprint Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza
    Shahid H Bokhari
    The Ohio State University, Columbus, OH, USA
    IEEE/ACM Trans Comput Biol Bioinform 9:214-27. 2012
  8. pmc Bacterial 16S sequence analysis of severe caries in young permanent teeth
    Erin L Gross
    Division of Oral Biology, The Ohio State University, College of Dentistry, Columbus, Ohio 43210, USA
    J Clin Microbiol 48:4121-8. 2010
  9. pmc An XML-based system for synthesis of data from disparate databases
    Tahsin Kurc
    Biomedical Informatics Department, Ohio State University, 3184 Graves Hall, 333 West 10th Avenue, Columbus, OH 43210, USA
    J Am Med Inform Assoc 13:289-301. 2006
  10. pmc Genetic diversity and recombination of porcine sapoviruses
    Qiu hong Wang
    Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, 1680 Madison Avenue, Wooster, OH 44691, USA
    J Clin Microbiol 43:5963-72. 2005

Collaborators

Detail Information

Publications14

  1. pmc Selection for resistance to oseltamivir in seasonal and pandemic H1N1 influenza and widespread co-circulation of the lineages
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, College of Medicine, Columbus, OH 43210, USA
    Int J Health Geogr 9:13. 2010
    ....
  2. doi request reprint Echinoderm phylogeny including Xyloplax, a progenetic asteroid
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 West 10th Avenue, Columbus, OH 43210, USA
    Syst Biol 60:420-38. 2011
    ..Based on this, we argue that the proposed class and infraclass status of Xyloplax should be suppressed...
  3. doi request reprint Genome informatics of influenza A: from data sharing to shared analytical capabilities
    Daniel A Janies
    Department of Biomedical Informatics, The Ohio State University, Columbus, 43210, USA
    Anim Health Res Rev 11:73-9. 2010
    ....
  4. ncbi request reprint Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)
    Daniel Janies
    Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W 10th Ave, Columbus, Ohio 43210 1239, USA
    Syst Biol 56:321-9. 2007
  5. pmc CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome
    Ann L Griffen
    Division of Pediatric Dentistry, College of Dentistry, The Ohio State University, Columbus, Ohio, United States of America
    PLoS ONE 6:e19051. 2011
    ..The CORE database is available as a searchable interface and for download at http://microbiome.osu.edu...
  6. doi request reprint Reassortment networks for investigating the evolution of segmented viruses
    Shahid H Bokhari
    Department of Biomedical Informatics, Ohio State University, 3190 Graves Hall, 333 W 10th Ave Columbus, OH 43210, USA
    IEEE/ACM Trans Comput Biol Bioinform 7:288-98. 2010
    ..The reassortment network, with O(taun2) nodes, is then constructed using these distances. The ancestors and descendents of a specific virus can be traced via shortest paths in this network, which can be found in O(taun3) time...
  7. doi request reprint Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza
    Shahid H Bokhari
    The Ohio State University, Columbus, OH, USA
    IEEE/ACM Trans Comput Biol Bioinform 9:214-27. 2012
    ..This specificity and functional constraint render our results actionable for further experiments in vitro and in vivo...
  8. pmc Bacterial 16S sequence analysis of severe caries in young permanent teeth
    Erin L Gross
    Division of Oral Biology, The Ohio State University, College of Dentistry, Columbus, Ohio 43210, USA
    J Clin Microbiol 48:4121-8. 2010
    ....
  9. pmc An XML-based system for synthesis of data from disparate databases
    Tahsin Kurc
    Biomedical Informatics Department, Ohio State University, 3184 Graves Hall, 333 West 10th Avenue, Columbus, OH 43210, USA
    J Am Med Inform Assoc 13:289-301. 2006
    ..The data management system also allows collaborators to share data in a uniform way and supports complex queries that target data sets...
  10. pmc Genetic diversity and recombination of porcine sapoviruses
    Qiu hong Wang
    Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, 1680 Madison Avenue, Wooster, OH 44691, USA
    J Clin Microbiol 43:5963-72. 2005
    ..The presence of porcine SaVs more similar to human SaVs is a significant finding because of the potential for zoonotic infections or generation of porcine/human recombinants if intragenogroup human strains exist...
  11. pmc GRASSIUS: a platform for comparative regulatory genomics across the grasses
    Alper Yilmaz
    Department of Plant Cellular and Molecular Biology, The Ohio State University, Columbus, Ohio 43210, USA
    Plant Physiol 149:171-80. 2009
    ..The integration of GrassTFDB and GrassPROMDB will be accomplished through GrassRegNet as a first step in representing the architecture of grass regulatory networks. GRASSIUS can be accessed from www.grassius.org...
  12. ncbi request reprint Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation
    Xinsheng Zhang
    Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, 1680 Madison Ave, Wooster, OH 44691, USA
    Virology 363:1-10. 2007
    ..These data suggest that BCoV evolves through quasispecies development, and that enteric BCoV isolates are more prone to genetic changes and may mutate to resemble respiratory BCoV strains after tissue culture passage...
  13. ncbi request reprint Large scale genotype-phenotype correlation analysis based on phylogenetic trees
    Farhat Habib
    Department of Physics, The Ohio State University, Columbus, OH 43210, USA
    Bioinformatics 23:785-8. 2007
    ..We use these methods to find SNPs correlated with resistance to Bacillus anthracis in inbred mouse strains. Our findings are consistent with the current biological literature, and also suggest potential novel candidate genes...
  14. pmc Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus
    Xinsheng Zhang
    Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, 1680 Madison Ave, Wooster, OH 44691, USA
    Virology 358:424-35. 2007
    ..Phylogenetic analyses showed that virulence is an evolutionarily labile trait in TGEV and that TGEV strains as a group share a common ancestor with PRCV...