Janan T Eppig

Summary

Affiliation: The Jackson Laboratory
Country: USA

Publications

  1. pmc The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse
    Janan T Eppig
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 40:D881-6. 2012
  2. pmc The mouse genome database (MGD): new features facilitating a model system
    Janan T Eppig
    The Jackson Laboratory 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 35:D630-7. 2007
  3. pmc The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology
    Janan T Eppig
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 33:D471-5. 2005
  4. pmc The Mouse Genome Database genotypes::phenotypes
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 37:D712-9. 2009
  5. pmc The Mouse Genome Database (MGD): updates and enhancements
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 34:D562-7. 2006
  6. pmc MGD: the Mouse Genome Database
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 31:193-5. 2003
  7. pmc The Mouse Genome Database: enhancements and updates
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA
    Nucleic Acids Res 38:D586-92. 2010
  8. pmc The Mouse Genome Database (MGD): mouse biology and model systems
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 36:D724-8. 2008
  9. ncbi request reprint Mouse genome informatics (MGI) resources for pathology and toxicology
    Janan T Eppig
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Toxicol Pathol 35:456-7. 2007
  10. pmc The mouse Gene Expression Database (GXD): 2007 update
    Constance M Smith
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 35:D618-23. 2007

Collaborators

Detail Information

Publications34

  1. pmc The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse
    Janan T Eppig
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 40:D881-6. 2012
    ....
  2. pmc The mouse genome database (MGD): new features facilitating a model system
    Janan T Eppig
    The Jackson Laboratory 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 35:D630-7. 2007
    ....
  3. pmc The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology
    Janan T Eppig
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 33:D471-5. 2005
    ....
  4. pmc The Mouse Genome Database genotypes::phenotypes
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 37:D712-9. 2009
    ..Recent improvements in MGD described here include the unified mouse gene catalog for NCBI Build 37 of the reference genome assembly, and improved representation of mouse mutants and phenotypes...
  5. pmc The Mouse Genome Database (MGD): updates and enhancements
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 34:D562-7. 2006
    ..informatics.jax.org. Recent improvements in MGD described here include the incorporation of an interactive genome browser, the enhancement of phenotype resources and the further development of functional annotation resources...
  6. pmc MGD: the Mouse Genome Database
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 31:193-5. 2003
    ..Recent developments include a general implementation of database structures for controlled vocabularies and the integration of a phenotype classification system...
  7. pmc The Mouse Genome Database: enhancements and updates
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA
    Nucleic Acids Res 38:D586-92. 2010
    ....
  8. pmc The Mouse Genome Database (MGD): mouse biology and model systems
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 36:D724-8. 2008
    ..Recent improvements in MGD described here include the association of gene trap data with mouse genes and a new batch query capability for customized data access and retrieval...
  9. ncbi request reprint Mouse genome informatics (MGI) resources for pathology and toxicology
    Janan T Eppig
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Toxicol Pathol 35:456-7. 2007
  10. pmc The mouse Gene Expression Database (GXD): 2007 update
    Constance M Smith
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 35:D618-23. 2007
    ..GXD is available through the MGI web site at http://www.informatics.jax.org/ or directly at http://www.informatics.jax.org/menus/expression_menu.shtml...
  11. pmc The mouse genome database: genotypes, phenotypes, and models of human disease
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA
    Nucleic Acids Res 41:D885-91. 2013
    ....
  12. pmc The Mouse Genome Database (MGD): integrating biology with the genome
    Carol J Bult
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 32:D476-81. 2004
    ..Recent developments in MGD discussed here include an extensive integration of the mouse sequence data and substantial revisions in the presentation, query and visualization of sequence data...
  13. pmc The mouse Gene Expression Database (GXD): 2011 update
    Jacqueline H Finger
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 39:D835-41. 2011
    ..GXD is available through the MGI web site (www.informatics.jax.org), or directly at www.informatics.jax.org/expression.shtml...
  14. pmc The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics
    Judith A Blake
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 39:D842-8. 2011
    ....
  15. pmc The mouse Gene Expression Database (GXD): updates and enhancements
    David P Hill
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 32:D568-71. 2004
    ..GXD is accessible through the MGI website at http://www.informatics.jax.org/ or directly at http://www. informatics.jax.org/menus/expression_menu.shtml...
  16. pmc Mouse Tumor Biology Database (MTB): status update and future directions
    Dale A Begley
    The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine, USA
    Nucleic Acids Res 35:D638-42. 2007
    ..A new pathology data submission tool allows users to submit, edit and release data to the MTB system...
  17. pmc The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
    Cynthia L Smith
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Genome Biol 6:R7. 2005
    ..The MP Ontology is currently used by the Mouse Genome Database and Rat Genome Database to represent phenotypic data...
  18. pmc The Mouse Tumor Biology database
    Debra M Krupke
    Jackson Laboratory, Mouse Tumour Biology Database, 600 Main Street, Bar Harbor, Maine 04609, USA
    Nat Rev Cancer 8:459-65. 2008
    ..Tools to integrate, locate and visualize these data are crucial to aid researchers in their investigations. The Mouse Tumor Biology database (http://tumor.informatics.jax.org) seeks to address that need...
  19. pmc The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium
    Martin Ringwald
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 39:D849-55. 2011
    ..The IKMC database provides data to, and features extensive interconnections with, other community databases...
  20. pmc The Mouse Genome Database (MGD): the model organism database for the laboratory mouse
    Judith A Blake
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Nucleic Acids Res 30:113-5. 2002
    ....
  21. pmc Disease model curation improvements at Mouse Genome Informatics
    Susan M Bello
    Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Database (Oxford) 2012:bar063. 2012
    ..Here we describe our evaluation of the CTD application, the extensions made by MGI and discuss the strengths and weaknesses of this approach. DATABASE URL: http://www.informatics.jax.org/..
  22. pmc The mammalian phenotype ontology: enabling robust annotation and comparative analysis
    Cynthia L Smith
    The Jackson Laboratory, Box 24, 600 Main Street, Bar Harbor, ME 04605, USA
    Wiley Interdiscip Rev Syst Biol Med 1:390-9. 2009
    ....
  23. pmc Connecting sequence and biology in the laboratory mouse
    Richard M Baldarelli
    Mouse Genome Informatics Group, The Jackson Laboratory, Bar Harbor, Maine 04609, USA
    Genome Res 13:1505-19. 2003
    ..In particular, we describe the methods and results of integration of 60,770 FANTOM2 mouse cDNAs with gene records in the databases of MGI and LocusLink...
  24. ncbi request reprint High incidence, early onset of histiocytic sarcomas in mice with Hertwig's anemia
    Jane E Barker
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Exp Hematol 33:1118-29. 2005
    ..Treatment specific for HS has not been developed primarily due to deficiencies of appropriate animal models with high incidence/early onset. Mice with Hertwig's anemia (an/an) provide a potential model...
  25. ncbi request reprint Antibodies that label paraffin-embedded mouse tissues: a collaborative endeavor
    Igor Mikaelian
    The Jackson Laboratory, Bar Harbor, Maine 04609 1500, USA
    Toxicol Pathol 32:181-91. 2004
    ..Regularly updated information on immunohistochemistry of normal and neoplastic mouse tissues is accessible online at (http://tumor.informatics.jax.org); links to antibody suppliers' web sites are provided...
  26. pmc Beyond knockouts: cre resources for conditional mutagenesis
    Stephen A Murray
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Mamm Genome 23:587-99. 2012
    ..We discuss the current progress on all of these fronts and the challenges that remain to ensure the scientific community can capitalize on the tremendous number of mouse resources at their disposal...
  27. pmc Supporting conditional mouse mutagenesis with a comprehensive cre characterization resource
    Caleb S Heffner
    The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA
    Nat Commun 3:1218. 2012
    ..Together, these results highlight the importance of deep characterization of cre strains, and provide the scientific community with a critical resource for cre strain information...
  28. pmc Mouse mutants and phenotypes: accessing information for the study of mammalian gene function
    Martin Ringwald
    The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA
    Methods 53:405-10. 2011
    ..Further, we describe means to access genetic and phenotypic data that identify mouse models for specific human diseases...
  29. pmc The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
    Cynthia L Smith
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    Mamm Genome 23:653-68. 2012
    ..Finally we discuss future application of the MP in providing standard descriptors of the phenotype pipeline test results from the International Mouse Phenotype Consortium projects...
  30. ncbi request reprint Corralling conditional mutations: a unified resource for mouse phenotypes
    Janan T Eppig
    The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA
    Genesis 32:63-5. 2002
  31. pmc Proteotypic classification of spontaneous and transgenic mammary neoplasms
    Igor Mikaelian
    The Jackson Laboratory, Bar Harbor, Maine, USA
    Breast Cancer Res 6:R668-79. 2004
    ....
  32. ncbi request reprint Rules and guidelines for mouse gene, allele, and mutation nomenclature: a condensed version
    Lois J Maltais
    The Jackson Laboratory, 600 Main St, Bar Harbor, Maine 04609, USA
    Genomics 79:471-4. 2002
  33. pmc The comprehensive mouse radiation hybrid map densely cross-referenced to the recombination map: a tool to support the sequence assemblies
    Lucy B Rowe
    The Jackson Laboratory, Bar Harbor, Maine 04609, USA
    Genome Res 13:122-33. 2003
    ..We have compared these linked framework maps to the Ensemble mouse genome sequence assembly, and show that they are a useful medium resolution tool for both validating sequence assembly and elucidating chromosome biology...
  34. ncbi request reprint The Mouse Tumor Biology Database: a public resource for cancer genetics and pathology of the mouse
    Dieter Naf
    Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, Maine 04609, USA
    Cancer Res 62:1235-40. 2002
    ..We outline current content, data acquisition strategies, and query mechanisms for MTB. MTB is accessible on-line at http://tumor.informatics.jax.org...