Alexander D Diehl

Summary

Affiliation: The Jackson Laboratory
Country: USA

Publications

  1. pmc Logical development of the cell ontology
    Terrence F Meehan
    Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USA
    BMC Bioinformatics 12:6. 2011
  2. pmc Muscle Research and Gene Ontology: New standards for improved data integration
    Erika Feltrin
    CRIBI Interdepartmental Biotechnology Center, University of Padua, Padua, Italy
    BMC Med Genomics 2:6. 2009
  3. pmc An improved ontological representation of dendritic cells as a paradigm for all cell types
    Anna Maria Masci
    Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA
    BMC Bioinformatics 10:70. 2009
  4. ncbi Ontology development for biological systems: immunology
    Alexander D Diehl
    Mouse Genome Informatics, The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04605, USA
    Bioinformatics 23:913-5. 2007
  5. pmc Hematopoietic cell types: prototype for a revised cell ontology
    Alexander D Diehl
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    J Biomed Inform 44:75-9. 2011
  6. pmc Protein Ontology: a controlled structured network of protein entities
    Darren A Natale
    Protein Information Resource, Georgetown University Medical Center, WA 20007, USA, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA, Department of Bioinformatics and Computational Biology, The Jackson Laboratory, Bar Harbor, ME 04609, USA, Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, NY 10016, USA, Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA, Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY 14203, USA, Department of Immunology, Duke University Medical Center, Durham, NC 27705, USA and Department of Oral Diagnostic Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY 14214, USA
    Nucleic Acids Res 42:D415-21. 2014

Collaborators

Detail Information

Publications6

  1. pmc Logical development of the cell ontology
    Terrence F Meehan
    Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USA
    BMC Bioinformatics 12:6. 2011
    ..By making the information in the ontology computable, we can use automated reasoners to detect errors and assist with classification. Here we report on the generation of computable definitions for the hematopoietic cell types in the CL...
  2. pmc Muscle Research and Gene Ontology: New standards for improved data integration
    Erika Feltrin
    CRIBI Interdepartmental Biotechnology Center, University of Padua, Padua, Italy
    BMC Med Genomics 2:6. 2009
    ..We actively encourage community feedback on, and gene product annotation with these new terms. Please visit the Muscle Community Annotation Wiki http://wiki.geneontology.org/index.php/Muscle_Biology...
  3. pmc An improved ontological representation of dendritic cells as a paradigm for all cell types
    Anna Maria Masci
    Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA
    BMC Bioinformatics 10:70. 2009
    ..This approach limits the CL's utility for computation and for cross-species data integration...
  4. ncbi Ontology development for biological systems: immunology
    Alexander D Diehl
    Mouse Genome Informatics, The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04605, USA
    Bioinformatics 23:913-5. 2007
    ....
  5. pmc Hematopoietic cell types: prototype for a revised cell ontology
    Alexander D Diehl
    The Jackson Laboratory, Bar Harbor, ME 04609, USA
    J Biomed Inform 44:75-9. 2011
    ..The methods and improvements to the CL in this area represent a paradigm for improvement of the entire ontology over time...
  6. pmc Protein Ontology: a controlled structured network of protein entities
    Darren A Natale
    Protein Information Resource, Georgetown University Medical Center, WA 20007, USA, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA, Department of Bioinformatics and Computational Biology, The Jackson Laboratory, Bar Harbor, ME 04609, USA, Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, NY 10016, USA, Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA, Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY 14203, USA, Department of Immunology, Duke University Medical Center, Durham, NC 27705, USA and Department of Oral Diagnostic Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY 14214, USA
    Nucleic Acids Res 42:D415-21. 2014
    ..The past few years have seen growth and changes to the PRO, as well as new points of access to the data and new applications of PRO in immunology and proteomics. Here we describe some of these developments. ..