Jonathan H Badger

Summary

Affiliation: The Institute for Genomic Research
Country: USA

Publications

  1. pmc Comparative analysis of programmed cell death pathways in filamentous fungi
    Natalie D Fedorova
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    BMC Genomics 6:177. 2005
  2. pmc Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus
    Jonathan H Badger
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    J Bacteriol 188:6841-50. 2006
  3. ncbi request reprint Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales
    Jonathan H Badger
    The Institute for Genomic Research, Rockville, MD 20850, USA
    Int J Syst Evol Microbiol 55:1021-6. 2005
  4. pmc Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice
    Derrick E Fouts
    J Craig Venter Institute, Rockville, Maryland, USA
    PLoS Genet 4:e1000141. 2008
  5. pmc Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
    Robert S Coyne
    Genomic Medicine, J Craig Venter Institute, Rockville, MD 20850, USA
    Genome Biol 12:R100. 2011
  6. ncbi request reprint Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus
    Garry S A Myers
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nat Biotechnol 25:569-75. 2007
  7. pmc Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    Jonathan A Eisen
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 4:e286. 2006
  8. pmc Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species
    Derrick E Fouts
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 3:e15. 2005
  9. pmc Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
    Yuansha Chen
    The J Craig Venter Institute, Rockville, MD, USA
    BMC Genomics 12:294. 2011
  10. pmc Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
    Natalie D Fedorova
    The J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS Genet 4:e1000046. 2008

Detail Information

Publications11

  1. pmc Comparative analysis of programmed cell death pathways in filamentous fungi
    Natalie D Fedorova
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    BMC Genomics 6:177. 2005
    ....
  2. pmc Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus
    Jonathan H Badger
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    J Bacteriol 188:6841-50. 2006
    ..neptunium genome will provide an important resource for the study of other interesting biological processes including chromosome segregation, polar growth, and cell aging...
  3. ncbi request reprint Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales
    Jonathan H Badger
    The Institute for Genomic Research, Rockville, MD 20850, USA
    Int J Syst Evol Microbiol 55:1021-6. 2005
    ..The possible reasons why the 16S rRNA gene sequence gives conflicting results in this case are also discussed...
  4. pmc Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice
    Derrick E Fouts
    J Craig Venter Institute, Rockville, Maryland, USA
    PLoS Genet 4:e1000141. 2008
    ....
  5. pmc Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
    Robert S Coyne
    Genomic Medicine, J Craig Venter Institute, Rockville, MD 20850, USA
    Genome Biol 12:R100. 2011
    ..Indeed, it is closely related to the model organism Tetrahymena thermophila. Genomic studies represent a promising strategy to reduce the impact of this disease and to understand the evolutionary transition to parasitism...
  6. ncbi request reprint Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus
    Garry S A Myers
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nat Biotechnol 25:569-75. 2007
    ..Screening of these proteins against ovine antisera identified eight immunogenic proteins that are candidate antigens for a cross-protective vaccine...
  7. pmc Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    Jonathan A Eisen
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 4:e286. 2006
    ..thermophila an ideal model for functional genomic studies to address biological, biomedical, and biotechnological questions of fundamental importance...
  8. pmc Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species
    Derrick E Fouts
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 3:e15. 2005
    ....
  9. pmc Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
    Yuansha Chen
    The J Craig Venter Institute, Rockville, MD, USA
    BMC Genomics 12:294. 2011
    ..The sixth pandemic strain sequenced in this study was serotype O4:K68...
  10. pmc Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
    Natalie D Fedorova
    The J Craig Venter Institute, Rockville, Maryland, United States of America
    PLoS Genet 4:e1000046. 2008
    ..The role of duplication in the origin of lineage-specific genes is further underlined by the discovery of genomic islands that seem to function as designated "gene dumps" and, perhaps, simultaneously, as "gene factories"...
  11. pmc Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
    Brian Palenik
    Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093, USA
    Proc Natl Acad Sci U S A 103:13555-9. 2006
    ..In addition, the types of potentially horizontally transferred genes are markedly different between the coastal and open ocean genomes and suggest a more prominent role for phages in horizontal gene transfer in oligotrophic environments...