Danh V Nguyen

Summary

Affiliation: Texas A and M University
Country: USA

Publications

  1. ncbi Multi-class cancer classification via partial least squares with gene expression profiles
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1216-26. 2002
  2. ncbi Partial least squares proportional hazard regression for application to DNA microarray survival data
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1625-32. 2002
  3. ncbi DNA microarray experiments: biological and technological aspects
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, Texas 77843 3143, USA
    Biometrics 58:701-17. 2002
  4. ncbi Chemopreventive n-3 polyunsaturated fatty acids reprogram genetic signatures during colon cancer initiation and progression in the rat
    Laurie A Davidson
    Faculty of Nutrition, Texas A and M University, College Station, Texas 77843-2471, USA
    Cancer Res 64:6797-804. 2004
  5. ncbi Covariate adjusted correlation analysis with application to FMR1 premutation female carrier data
    Damla Senturk
    Department of Statistics, Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Biometrics 65:781-92. 2009
  6. ncbi Tumor classification by partial least squares using microarray gene expression data
    Danh V Nguyen
    Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA
    Bioinformatics 18:39-50. 2002
  7. ncbi Is cross-validation better than resubstitution for ranking genes?
    Ulisses Braga-Neto
    Section of Clinical Cancer Genetics, University of Texas M D Anderson Cancer Center, Houston, TX, USA
    Bioinformatics 20:253-8. 2004
  8. ncbi Partial least squares dimension reduction for microarray gene expression data with a censored response
    Danh V Nguyen
    Division of Biostatistics, Public Health Sciences, School of Medicine, University of California, One Shields Avenue, Davis, CA 95616 8638, USA
    Math Biosci 193:119-37. 2005

Collaborators

Detail Information

Publications8

  1. ncbi Multi-class cancer classification via partial least squares with gene expression profiles
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1216-26. 2002
    ..The need for multi-class discrimination methodologies is apparent in many microarray experiments where various cancer types are considered simultaneously...
  2. ncbi Partial least squares proportional hazard regression for application to DNA microarray survival data
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1625-32. 2002
    ..The first data set contains 40 diffuse large B-cell lymphoma (DLBCL) tissue samples and the second data set contains 49 tissue samples from patients with locally advanced breast cancer in a prospective study...
  3. ncbi DNA microarray experiments: biological and technological aspects
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, Texas 77843 3143, USA
    Biometrics 58:701-17. 2002
    ..We emphasize the importance of basic research in DNA array technologies to improve the reliability of future experiments...
  4. ncbi Chemopreventive n-3 polyunsaturated fatty acids reprogram genetic signatures during colon cancer initiation and progression in the rat
    Laurie A Davidson
    Faculty of Nutrition, Texas A and M University, College Station, Texas 77843-2471, USA
    Cancer Res 64:6797-804. 2004
    ....
  5. ncbi Covariate adjusted correlation analysis with application to FMR1 premutation female carrier data
    Damla Senturk
    Department of Statistics, Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Biometrics 65:781-92. 2009
    ..Finally, the results provide independent support for a specific jointly additive and multiplicative adjustment form for ActRatio previously proposed in the literature...
  6. ncbi Tumor classification by partial least squares using microarray gene expression data
    Danh V Nguyen
    Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA
    Bioinformatics 18:39-50. 2002
    ..Stability of classification results and methods were further assessed by re-randomization studies...
  7. ncbi Is cross-validation better than resubstitution for ranking genes?
    Ulisses Braga-Neto
    Section of Clinical Cancer Genetics, University of Texas M D Anderson Cancer Center, Houston, TX, USA
    Bioinformatics 20:253-8. 2004
    ..In all cases, resubstitution is competitive with cross-validation relative to ranking accuracy. This is in addition to the enormous savings in computation time afforded by resubstitution...
  8. ncbi Partial least squares dimension reduction for microarray gene expression data with a censored response
    Danh V Nguyen
    Division of Biostatistics, Public Health Sciences, School of Medicine, University of California, One Shields Avenue, Davis, CA 95616 8638, USA
    Math Biosci 193:119-37. 2005
    ..Additionally, we examine the effect of censoring on dimension reduction stage. The performance of all methods deteriorates for a high censoring rate, although PLS-PH performed relatively best overall...