Wang X, Alshawaqfeh M, Dang X, Wajid B, Noor A, Qaraqe M, et al. An Overview of NCA-Based Algorithms for Transcriptional Regulatory Network Inference. Microarrays (Basel). 2015;4:596-617 pubmed publisher
..This paper first overviews the computational principles behind NCA, and then, it surveys the state-of-the-art NCA-based algorithms proposed in the literature for TRN reconstruction. ..
Alshawaqfeh M, Serpedin E, Younes A. Inferring microbial interaction networks from metagenomic data using SgLV-EKF algorithm. BMC Genomics. 2017;18:228 pubmed publisher
..Performance analysis demonstrates that the proposed SgLV-EKF algorithm represents a powerful and reliable tool to infer MINs and track their dynamics. ..
Alshawaqfeh M, Bashaireh A, Serpedin E, Suchodolski J. Reliable Biomarker discovery from Metagenomic data via RegLRSD algorithm. BMC Bioinformatics. 2017;18:328 pubmed publisher
..This renders RegLRSD as a reliable and powerful tool for identifying potential metagenomic biomarkers. ..