Jizu Zhi

Summary

Affiliation: State University of New York
Country: USA

Publications

  1. pmc The lipogenic gene spot 14 is activated in bone by disuse yet remains unaffected by a mechanical signal anabolic to the skeleton
    Jizu Zhi
    Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794 2580, USA
    Calcif Tissue Int 82:148-54. 2008
  2. pmc Human MLPA Probe Design (H-MAPD): a probe design tool for both electrophoresis-based and bead-coupled human multiplex ligation-dependent probe amplification assays
    Jizu Zhi
    Genomics Core Facility, School of Medicine, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Genomics 9:407. 2008
  3. pmc MAPD: a probe design suite for multiplex ligation-dependent probe amplification assays
    Jizu Zhi
    Bioinformatics Core Facility, School of Medicine, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Res Notes 3:137. 2010
  4. pmc Tiled microarray identification of novel viral transcript structures and distinct transcriptional profiles during two modes of productive murine gammaherpesvirus 68 infection
    Benson Yee Hin Cheng
    Department of Molecular Genetics and Microbiology, State University of New York Stony Brook, Stony Brook, New York, USA
    J Virol 86:4340-57. 2012
  5. ncbi request reprint Proline-rich transcript of the brain (prtb) is a serum-responsive gene in osteoblasts and upregulated during adhesion
    Dirk W Sommerfeldt
    Department of Orthopaedics, State University of New York at Stony Brook, Stony Brook, New York 11794 2580, USA
    J Cell Biochem 84:301-8. 2002
  6. pmc Direct reprogramming by oncogenic Ras and Myc
    Irene Ischenko
    Department of Molecular Genetics and Microbiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA
    Proc Natl Acad Sci U S A 110:3937-42. 2013
  7. ncbi request reprint Analysis techniques for microarray time-series data
    Vladimir Filkov
    Department of Computer Science, State University of New York, Stony Brook, NY 11794, USA
    J Comput Biol 9:317-30. 2002
  8. pmc Inhibition of matrix metalloproteinase 14 (MMP-14)-mediated cancer cell migration
    Kevin Zarrabi
    Department of Medicine Cancer Prevention, Stony Brook University, Stony Brook, New York 11794, USA
    J Biol Chem 286:33167-77. 2011

Collaborators

Detail Information

Publications8

  1. pmc The lipogenic gene spot 14 is activated in bone by disuse yet remains unaffected by a mechanical signal anabolic to the skeleton
    Jizu Zhi
    Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794 2580, USA
    Calcif Tissue Int 82:148-54. 2008
    ....
  2. pmc Human MLPA Probe Design (H-MAPD): a probe design tool for both electrophoresis-based and bead-coupled human multiplex ligation-dependent probe amplification assays
    Jizu Zhi
    Genomics Core Facility, School of Medicine, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Genomics 9:407. 2008
    ..There exist only one or two commercial software packages for traditional electrophoresis-based MLPA probe design. To our knowledge, no software is yet available that performs bead-coupled MLPA probe design...
  3. pmc MAPD: a probe design suite for multiplex ligation-dependent probe amplification assays
    Jizu Zhi
    Bioinformatics Core Facility, School of Medicine, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Res Notes 3:137. 2010
    ..However, probe design is time consuming and error prone. Recently software has been developed to help human genomic MLPA probe selection and optimization. For other genomes and MS-MLPA, probe design remains a challenge...
  4. pmc Tiled microarray identification of novel viral transcript structures and distinct transcriptional profiles during two modes of productive murine gammaherpesvirus 68 infection
    Benson Yee Hin Cheng
    Department of Molecular Genetics and Microbiology, State University of New York Stony Brook, Stony Brook, New York, USA
    J Virol 86:4340-57. 2012
    ....
  5. ncbi request reprint Proline-rich transcript of the brain (prtb) is a serum-responsive gene in osteoblasts and upregulated during adhesion
    Dirk W Sommerfeldt
    Department of Orthopaedics, State University of New York at Stony Brook, Stony Brook, New York 11794 2580, USA
    J Cell Biochem 84:301-8. 2002
    ..Based on these data, we hypothesize that prtb may function as an immediate early, serum-responsive, and adhesion-inducible gene with possible involvement in processes such as cell cycle control, adhesion, and proliferation...
  6. pmc Direct reprogramming by oncogenic Ras and Myc
    Irene Ischenko
    Department of Molecular Genetics and Microbiology, State University of New York at Stony Brook, Stony Brook, NY 11794, USA
    Proc Natl Acad Sci U S A 110:3937-42. 2013
    ..Moreover, the disturbance in the normally existing dynamic equilibrium between cancer stem cells and non-stem cancer cells allows the formation of cancer stem cells with high metastatic capacity at any time during cancer progression...
  7. ncbi request reprint Analysis techniques for microarray time-series data
    Vladimir Filkov
    Department of Computer Science, State University of New York, Stony Brook, NY 11794, USA
    J Comput Biol 9:317-30. 2002
    ..Finally, we note that the correlation coefficient of sequences over alphabets of size two can exhibit very counterintuitive behavior when compared with the Hamming distance...
  8. pmc Inhibition of matrix metalloproteinase 14 (MMP-14)-mediated cancer cell migration
    Kevin Zarrabi
    Department of Medicine Cancer Prevention, Stony Brook University, Stony Brook, New York 11794, USA
    J Biol Chem 286:33167-77. 2011
    ..Furthermore, these peptides interfere with cancer metastasis without affecting primary tumor growth. Thus, targeting the MMP-14 hemopexin domain represents a novel approach to inhibit MMP-14-mediated cancer dissemination...