JOHN WHITIN

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Identifying technical aliases in SELDI mass spectra of complex mixtures of proteins
    John C Whitin
    Department of Pediatrics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA USA
    BMC Res Notes 6:358. 2013
  2. pmc Cloud-based solution to identify statistically significant MS peaks differentiating sample categories
    Jun Ji
    Departments of Surgery, Stanford University, Stanford, CA 94305, USA
    BMC Res Notes 6:109. 2013
  3. pmc A diagnostic algorithm combining clinical and molecular data distinguishes Kawasaki disease from other febrile illnesses
    Xuefeng B Ling
    Department of Pediatrics, Stanford University, Stanford, CA 94305, USA
    BMC Med 9:130. 2011
  4. ncbi request reprint Extracellular glutathione peroxidase is secreted basolaterally by human renal proximal tubule cells
    John C Whitin
    Department of Pediatrics, Stanford University, Stanford, California 94305 5208, USA
    Am J Physiol Renal Physiol 283:F20-8. 2002
  5. ncbi request reprint A potential biomarker in the cord blood of preterm infants who develop retinopathy of prematurity
    Ashima Madan
    Department of Pediatrics, Stanford University School of Medicine, Palo Alto, California 94304, USA
    Pediatr Res 61:215-21. 2007
  6. ncbi request reprint Improving feature detection and analysis of surface-enhanced laser desorption/ionization-time of flight mass spectra
    Scott M Carlson
    Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305 5208, USA
    Proteomics 5:2778-88. 2005
  7. ncbi request reprint Increased expression of extracellular glutathione peroxidase in mice with dextran sodium sulfate-induced experimental colitis
    Doris M Tham
    Department of Pediatrics, Stanford University School of Medicine, Stanford, California 94305, USA
    Pediatr Res 51:641-6. 2002
  8. ncbi request reprint Selenomethionine does not affect PSA secretion independent of its effect on LNCaP cell growth
    Suvarna Bhamre
    Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Prostate 54:315-21. 2003
  9. doi request reprint Plasma biomarkers in a mouse model of preterm labor
    Qing Yang
    Department of Pediatrics, Stanford University, Stanford, CA 94305, USA
    Pediatr Res 66:11-6. 2009

Collaborators

  • Reed A Dimmitt
  • Harvey J Cohen
  • Jun Ji
  • Xuefeng B Ling
  • James Schilling
  • Ashima Madan
  • Scott M Carlson
  • Kenneth Lau
  • Qing Yang
  • Tom To Sang Yu
  • Amir Najmi
  • Suvarna Bhamre
  • Doris M Tham
  • Qiaojun Wen
  • Jeffrey Ling
  • Helen Jiang
  • Lu Tian
  • Zheng Pan
  • Gigi Liu
  • Tom T S Yu
  • Jane C Burns
  • Yuichiro Sato
  • Sihua Peng
  • John T Kanegaye
  • Joseph Jin
  • Nihar R Nayak
  • Xuefeng Bruce Ling
  • George El-Ferzli

Detail Information

Publications9

  1. pmc Identifying technical aliases in SELDI mass spectra of complex mixtures of proteins
    John C Whitin
    Department of Pediatrics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA USA
    BMC Res Notes 6:358. 2013
    ..Previously we developed an algorithm that clustered mass spectrum peaks that were biologically or technically correlated. Here we demonstrate an algorithm that clusters correlated technical aliases only...
  2. pmc Cloud-based solution to identify statistically significant MS peaks differentiating sample categories
    Jun Ji
    Departments of Surgery, Stanford University, Stanford, CA 94305, USA
    BMC Res Notes 6:109. 2013
    ..Turnkey" solutions are needed for biomarker investigations to rapidly process MS data sets to identify statistically significant peaks for subsequent validation...
  3. pmc A diagnostic algorithm combining clinical and molecular data distinguishes Kawasaki disease from other febrile illnesses
    Xuefeng B Ling
    Department of Pediatrics, Stanford University, Stanford, CA 94305, USA
    BMC Med 9:130. 2011
    ..We sought to develop a diagnostic algorithm to help clinicians distinguish Kawasaki disease patients from febrile controls to allow timely initiation of treatment...
  4. ncbi request reprint Extracellular glutathione peroxidase is secreted basolaterally by human renal proximal tubule cells
    John C Whitin
    Department of Pediatrics, Stanford University, Stanford, California 94305 5208, USA
    Am J Physiol Renal Physiol 283:F20-8. 2002
    ..These data support the conclusion that eGPx is secreted through the basolateral membrane of human kidney proximal tubule cells into the extracellular fluid of the kidney, and from there enters blood plasma...
  5. ncbi request reprint A potential biomarker in the cord blood of preterm infants who develop retinopathy of prematurity
    Ashima Madan
    Department of Pediatrics, Stanford University School of Medicine, Palo Alto, California 94304, USA
    Pediatr Res 61:215-21. 2007
    ..Deamidation of globin chains is especially promising and may indicate underlying prenatal pathologic mechanisms in ROP. Validation studies will be undertaken to determine their clinical utility...
  6. ncbi request reprint Improving feature detection and analysis of surface-enhanced laser desorption/ionization-time of flight mass spectra
    Scott M Carlson
    Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305 5208, USA
    Proteomics 5:2778-88. 2005
    ..1 finds similar results for large signal peaks, but SSA improves the number and quality of differences betweens groups among lower signal peaks. SSA is also less likely to introduce systematic bias when normalizing spectra...
  7. ncbi request reprint Increased expression of extracellular glutathione peroxidase in mice with dextran sodium sulfate-induced experimental colitis
    Doris M Tham
    Department of Pediatrics, Stanford University School of Medicine, Stanford, California 94305, USA
    Pediatr Res 51:641-6. 2002
    ..This implies that renal production of E-GPx may be sensitive to insults distal to the kidney...
  8. ncbi request reprint Selenomethionine does not affect PSA secretion independent of its effect on LNCaP cell growth
    Suvarna Bhamre
    Department of Pediatrics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Prostate 54:315-21. 2003
    ..Individuals supplemented with selenium have reduced incidence of prostate cancer. This study determines whether selenomethionine specifically affects the secretion of prostate specific antigen (PSA) in vitro...
  9. doi request reprint Plasma biomarkers in a mouse model of preterm labor
    Qing Yang
    Department of Pediatrics, Stanford University, Stanford, CA 94305, USA
    Pediatr Res 66:11-6. 2009
    ..those that delivered at term. SAA2 has the potential to be a plasma biomarker that can identify pregnancies at risk for development of PTL...