Patricia L Whetzel

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc NCBO Technology: Powering semantically aware applications
    Patricia L Whetzel
    Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA
    J Biomed Semantics 4:S8. 2013
  2. pmc The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
    Joanne S Luciano
    Rensselaer Polytechnic Institute, Troy, NY, USA
    J Biomed Semantics 2:S1. 2011
  3. pmc BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
    Patricia L Whetzel
    Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA
    Nucleic Acids Res 39:W541-5. 2011
  4. pmc The National Center for Biomedical Ontology
    Mark A Musen
    Center for Biomedical Informatics Research, Stanford University, Stanford, California 94305 5479, USA
    J Am Med Inform Assoc 19:190-5. 2012
  5. pmc BioPortal: ontologies and integrated data resources at the click of a mouse
    Natalya F Noy
    Stanford Center for Biomedical Informatics Research, Stanford University
    Nucleic Acids Res 37:W170-3. 2009

Collaborators

  • Nigam H Shah
  • Barry Smith
  • Daniel L Rubin
  • Mark A Musen
  • Natalya F Noy
  • Joanne S Luciano
  • Christopher G Chute
  • Margaret Anne Story
  • Christine K Denney
  • Timothy Lebo
  • James P McCusker
  • Lee Harland
  • Scott M Marshall
  • Colin Batchelor
  • Thomas Gambet
  • Tim Clark
  • Susie Stephens
  • Christopher Domarew
  • Bosse Andersson
  • Jun Zhao
  • Chimezie Ogbuji
  • Michel Dumontier
  • Vipul Kashyap
  • Peter J Tonellato
  • Elgar Pichler
  • Eric Prud'hommeaux
  • Matthias Samwald
  • Péter Kós
  • Lynn Schriml
  • Julia Kozlovsky
  • Olivier Bodenreider
  • Deborah L McGuinness
  • Robert L Powers
  • Anja Jentzsch
  • Nicholas Griffith
  • Clement Jonquet
  • Michael Dorf
  • Margaret Anne Storey
  • Benjamin Dai

Detail Information

Publications5

  1. pmc NCBO Technology: Powering semantically aware applications
    Patricia L Whetzel
    Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA
    J Biomed Semantics 4:S8. 2013
    ..This overview will describe these classes of applications, discuss a few examples of each type, and which NCBO Web services are used by these applications...
  2. pmc The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
    Joanne S Luciano
    Rensselaer Polytechnic Institute, Troy, NY, USA
    J Biomed Semantics 2:S1. 2011
    ..Here, we describe a collaborative effort to produce a prototype Translational Medicine Knowledge Base (TMKB) capable of answering questions relating to clinical practice and pharmaceutical drug discovery...
  3. pmc BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
    Patricia L Whetzel
    Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA
    Nucleic Acids Res 39:W541-5. 2011
    ..Users can easily incorporate the NCBO Web services into software applications to generate semantically aware applications and to facilitate structured data collection...
  4. pmc The National Center for Biomedical Ontology
    Mark A Musen
    Center for Biomedical Informatics Research, Stanford University, Stanford, California 94305 5479, USA
    J Am Med Inform Assoc 19:190-5. 2012
    ....
  5. pmc BioPortal: ontologies and integrated data resources at the click of a mouse
    Natalya F Noy
    Stanford Center for Biomedical Informatics Research, Stanford University
    Nucleic Acids Res 37:W170-3. 2009
    ..Thus, BioPortal not only provides investigators, clinicians, and developers 'one-stop shopping' to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources...