Junhee Seok

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. ncbi A dynamic network of transcription in LPS-treated human subjects
    Junhee Seok
    Department of Bioengineering, Stanford University, Stanford, California, USA
    BMC Syst Biol 3:78. 2009
  2. ncbi Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
    Junhee Seok
    Stanford Genome Technology Center, 955 California Avenue, Palo Alto, California, 94305, USA
    BMC Bioinformatics 11:S8. 2010
  3. ncbi JETTA: junction and exon toolkits for transcriptome analysis
    Junhee Seok
    Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, USA
    Bioinformatics 28:1274-5. 2012
  4. ncbi Coding SNPs as intrinsic markers for sample tracking in large-scale transcriptome studies
    Weihong Xu
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA
    Biotechniques 52:386-8. 2012
  5. ncbi Genomic responses in mouse models poorly mimic human inflammatory diseases
    Junhee Seok
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94305, USA
    Proc Natl Acad Sci U S A 110:3507-12. 2013
  6. ncbi Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research
    Junhee Seok
    Stanford Genome Technology Center, Palo Alto, California, United States of America
    PLoS ONE 7:e31440. 2012

Detail Information

Publications6

  1. ncbi A dynamic network of transcription in LPS-treated human subjects
    Junhee Seok
    Department of Bioengineering, Stanford University, Stanford, California, USA
    BMC Syst Biol 3:78. 2009
    ..For example, Network Component Analysis (NCA) is an approach that can predict transcription factor activities over time as well as the relative regulatory influence of factors on each target gene...
  2. ncbi Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
    Junhee Seok
    Stanford Genome Technology Center, 955 California Avenue, Palo Alto, California, 94305, USA
    BMC Bioinformatics 11:S8. 2010
    ....
  3. ncbi JETTA: junction and exon toolkits for transcriptome analysis
    Junhee Seok
    Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, USA
    Bioinformatics 28:1274-5. 2012
    ..We demonstrate the software using data of human liver and muscle samples hybridized on an exon-junction array. AVAILABILITY: JETTA and its demonstrations are freely available at http://igenomed.stanford.edu/~junhee/JETTA/index.html..
  4. ncbi Coding SNPs as intrinsic markers for sample tracking in large-scale transcriptome studies
    Weihong Xu
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA
    Biotechniques 52:386-8. 2012
    ..Based on our results, we recommend the incorporation of cSNPs into future transcriptome array designs as intrinsic markers for sample tracking...
  5. ncbi Genomic responses in mouse models poorly mimic human inflammatory diseases
    Junhee Seok
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94305, USA
    Proc Natl Acad Sci U S A 110:3507-12. 2013
    ....
  6. ncbi Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research
    Junhee Seok
    Stanford Genome Technology Center, Palo Alto, California, United States of America
    PLoS ONE 7:e31440. 2012
    ..The overall results demonstrated that incorporating transcript annotations from genomic databases significantly helps the reconstruction of novel transcripts from short sequencing reads for transcriptome research...