Jeremy Schmutz

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. ncbi request reprint The DNA sequence and comparative analysis of human chromosome 5
    Jeremy Schmutz
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Ave, Palo Alto, California 94304, USA
    Nature 431:268-74. 2004
  2. ncbi request reprint Quality assessment of the human genome sequence
    Jeremy Schmutz
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
    Nature 429:365-8. 2004
  3. ncbi request reprint The DNA sequence and biology of human chromosome 19
    Jane Grimwood
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
    Nature 428:529-35. 2004
  4. ncbi request reprint Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
    Pamela F Colosimo
    Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305 5329, USA
    Science 307:1928-33. 2005
  5. pmc Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
    David L Goode
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA
    Genome Res 20:301-10. 2010
  6. pmc Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
    James P Noonan
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305 5120, USA
    Genome Res 14:2397-405. 2004
  7. ncbi request reprint The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome
    Catherine L Peichel
    Department of Developmental Biology and Howard Hughes Medical Institute, Stanford University School of Medicine, Palo Alto, CA 94305, USA
    Curr Biol 14:1416-24. 2004
  8. pmc The genomic basis of adaptive evolution in threespine sticklebacks
    Felicity C Jones
    Department of Developmental Biology, Beckman Center B300, Stanford University School of Medicine, Stanford California 94305, USA
    Nature 484:55-61. 2012
  9. pmc Gene conversion and the evolution of protocadherin gene cluster diversity
    James P Noonan
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305 5120, USA
    Genome Res 14:354-66. 2004
  10. ncbi request reprint Quality assessment of finished BAC sequences
    Jeremy Schmutz
    Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
    Methods Mol Biol 255:343-9. 2004

Collaborators

Detail Information

Publications15

  1. ncbi request reprint The DNA sequence and comparative analysis of human chromosome 5
    Jeremy Schmutz
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Ave, Palo Alto, California 94304, USA
    Nature 431:268-74. 2004
    ..These duplications are very recent evolutionary events and probably have a mechanistic role in human physiological variation, as deletions in these regions are the cause of debilitating disorders including spinal muscular atrophy...
  2. ncbi request reprint Quality assessment of the human genome sequence
    Jeremy Schmutz
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
    Nature 429:365-8. 2004
    ..The completed study covers the major contributing sequencing centres and is based on a rigorous combination of laboratory experiments and computational analysis...
  3. ncbi request reprint The DNA sequence and biology of human chromosome 19
    Jane Grimwood
    Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
    Nature 428:529-35. 2004
    ....
  4. ncbi request reprint Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
    Pamela F Colosimo
    Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305 5329, USA
    Science 307:1928-33. 2005
    ....
  5. pmc Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
    David L Goode
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA
    Genome Res 20:301-10. 2010
    ..These observations show that common, noncoding alleles contribute substantially to human phenotypes and that constraint-based analyses will be of value to identify phenotypically relevant variants in individual genomes...
  6. pmc Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
    James P Noonan
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305 5120, USA
    Genome Res 14:2397-405. 2004
    ..Our results indicate that coelacanth provides the ideal outgroup sequence against which tetrapod genomes can be measured. We therefore present L. menadoensis as a candidate for whole-genome sequencing...
  7. ncbi request reprint The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome
    Catherine L Peichel
    Department of Developmental Biology and Howard Hughes Medical Institute, Stanford University School of Medicine, Palo Alto, CA 94305, USA
    Curr Biol 14:1416-24. 2004
    ..Here, we investigate the genetic and chromosomal mechanisms that underlie sex determination in the threespine stickleback (Gasterosteus aculeatus)...
  8. pmc The genomic basis of adaptive evolution in threespine sticklebacks
    Felicity C Jones
    Department of Developmental Biology, Beckman Center B300, Stanford University School of Medicine, Stanford California 94305, USA
    Nature 484:55-61. 2012
    ..Both coding and regulatory changes occur in the set of loci underlying marine-freshwater evolution, but regulatory changes appear to predominate in this well known example of repeated adaptive evolution in nature...
  9. pmc Gene conversion and the evolution of protocadherin gene cluster diversity
    James P Noonan
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305 5120, USA
    Genome Res 14:354-66. 2004
    ..We propose that the combination of lineage-specific duplication, restricted gene conversion, and adaptive variation in diversified ectodomains drives vertebrate protocadherin cluster evolution...
  10. ncbi request reprint Quality assessment of finished BAC sequences
    Jeremy Schmutz
    Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
    Methods Mol Biol 255:343-9. 2004
  11. pmc A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks
    Felicity C Jones
    Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
    Curr Biol 22:83-90. 2012
    ....
  12. ncbi request reprint Sequence finishing
    Jeremy Schmutz
    Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
    Methods Mol Biol 255:333-42. 2004
  13. ncbi request reprint Assembly of DNA sequencing data
    Jeremy Schmutz
    Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
    Methods Mol Biol 255:319-32. 2004
  14. pmc Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
    Jamie A O'Rourke
    Department of Genetics, Developmental and Cellular Biology, Iowa State University, Ames, Iowa 50011, USA
    BMC Genomics 10:376. 2009
    ..To better understand the effect of iron availability on soybean yield, we identified genes in two near isogenic lines with changes in expression patterns when plants were grown in iron sufficient and iron deficient conditions...
  15. pmc Extensive linkage disequilibrium, a common 16.7-kilobase deletion, and evidence of balancing selection in the human protocadherin alpha cluster
    James P Noonan
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Am J Hum Genet 72:621-35. 2003
    ..This deletion appears in unaffected individuals from multiple populations, suggesting that a reduction in protocadherin gene number is not obviously deleterious...