- FOLD-EM: automated fold recognition in medium- and low-resolution (4-15 Å) electron density mapsMitul Saha
Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 7555 0647, USA
Bioinformatics 28:3265-73. 2012..Taken together, the best fitting non-overlapping structures would constitute a 'mosaic' backbone model of the assembly that could aid map interpretation and illuminate biological function...
- MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structuresMitul Saha
NIH Center for Biomedical Computation, Stanford University, Stanford, CA 94305, USA
Bioinformatics 26:i301-9. 2010..Our method can also been used to build atomic models for some maps. We also used MOTIF-EM to identify the conserved folds shared among dsDNA bacteriophages HK97, Epsilon 15, and ô29, though they have low-sequence similarity...