Daniel P Riordan

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome
    Daniel P Riordan
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA
    Nucleic Acids Res 39:1501-9. 2011
  2. pmc The yeast Rab GTPase Ypt1 modulates unfolded protein response dynamics by regulating the stability of HAC1 RNA
    Nikoleta G Tsvetanova
    Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
    PLoS Genet 8:e1002862. 2012
  3. pmc Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae
    Alexander F Lovejoy
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 9:e110799. 2014
  4. pmc Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    Daniel J Hogan
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS Biol 6:e255. 2008

Collaborators

Detail Information

Publications4

  1. pmc Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome
    Daniel P Riordan
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, USA
    Nucleic Acids Res 39:1501-9. 2011
    ....
  2. pmc The yeast Rab GTPase Ypt1 modulates unfolded protein response dynamics by regulating the stability of HAC1 RNA
    Nikoleta G Tsvetanova
    Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA
    PLoS Genet 8:e1002862. 2012
    ..Our findings establish that Ypt1 contributes to regulation of UPR signaling dynamics by promoting the decay of HAC1 RNA, suggesting a potential regulatory mechanism for linking vesicle trafficking to the UPR and ER homeostasis...
  3. pmc Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae
    Alexander F Lovejoy
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 9:e110799. 2014
    ..The approach and strategies that we report here should be generally applicable to the discovery of pseudouridylation, or other RNA modifications, in diverse biological contexts. ..
  4. pmc Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    Daniel J Hogan
    Department of Biochemistry, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS Biol 6:e255. 2008
    ..These results strongly suggest that combinatorial binding of RBPs to specific recognition elements in mRNAs is a pervasive mechanism for multi-dimensional regulation of their post-transcriptional fate...