Peng Qiu

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. doi request reprint Fast calculation of pairwise mutual information for gene regulatory network reconstruction
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, CA, United States
    Comput Methods Programs Biomed 94:177-80. 2009
  2. pmc Simultaneous class discovery and classification of microarray data using spectral analysis
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California 94305, USA
    J Comput Biol 16:935-44. 2009
  3. pmc Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California 94305, USA
    J Comput Biol 17:169-76. 2010
  4. pmc Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, CA, USA
    Nat Biotechnol 29:886-91. 2011
  5. pmc CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data
    Michael D Linderman
    Department of Electrical Engineering, Stanford University, Stanford, CA, USA
    Bioinformatics 28:2400-1. 2012
  6. pmc Discovering biological progression underlying microarray samples
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California, USA
    PLoS Comput Biol 7:e1001123. 2011
  7. doi request reprint An activity-subspace approach for estimating the integrated input function and relative distribution volume in PET parametric imaging
    Peng Qiu
    Department of Radiology, Stanford University, CA 94305, USA
    IEEE Trans Inf Technol Biomed 13:25-36. 2009
  8. pmc Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
    Sean C Bendall
    Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA
    Science 332:687-96. 2011

Collaborators

Detail Information

Publications8

  1. doi request reprint Fast calculation of pairwise mutual information for gene regulatory network reconstruction
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, CA, United States
    Comput Methods Programs Biomed 94:177-80. 2009
    ..6 hours. The increased efficiency of our algorithm improves the feasibility of applying mutual information based approaches for reconstructing large regulatory networks...
  2. pmc Simultaneous class discovery and classification of microarray data using spectral analysis
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California 94305, USA
    J Comput Biol 16:935-44. 2009
    ..We demonstrate the effectiveness of SPACC for class discovery and classification on microarray data of lymphomas and leukemias. SPACC software is available at http://icbp.stanford.edu/software/SPACC/...
  3. pmc Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California 94305, USA
    J Comput Biol 17:169-76. 2010
    ..The proposed method can be used with any method that relies on the mutual information to reconstruct networks...
  4. pmc Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, CA, USA
    Nat Biotechnol 29:886-91. 2011
    ..SPADE facilitates the analysis of cellular heterogeneity, the identification of cell types and comparison of functional markers in response to perturbations...
  5. pmc CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data
    Michael D Linderman
    Department of Electrical Engineering, Stanford University, Stanford, CA, USA
    Bioinformatics 28:2400-1. 2012
    ..10 onwards for Linux, OSX and Windows. CytoSPADE is implemented in R, C++ and Java. CONTACT: michael.linderman@mssm.edu SUPPLEMENTARY INFORMATION: Additional documentation available at http://cytospade.org...
  6. pmc Discovering biological progression underlying microarray samples
    Peng Qiu
    Department of Radiology, Stanford University, Stanford, California, USA
    PLoS Comput Biol 7:e1001123. 2011
    ....
  7. doi request reprint An activity-subspace approach for estimating the integrated input function and relative distribution volume in PET parametric imaging
    Peng Qiu
    Department of Radiology, Stanford University, CA 94305, USA
    IEEE Trans Inf Technol Biomed 13:25-36. 2009
    ..The proposed method is compared with a blind estimation method, iterative quadratic maximum-likelihood (IQML) via simulation, and the proposed method outperforms IQML. The proposed method is also evaluated in a brain PET dataset...
  8. pmc Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
    Sean C Bendall
    Baxter Laboratory in Stem Cell Biology, Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA
    Science 332:687-96. 2011
    ..Collectively, such single-cell analyses provide system-wide views of immune signaling in healthy human hematopoiesis, against which drug action and disease can be compared for mechanistic studies and pharmacologic intervention...