John R Pringle

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, CA 94025, USA
    BMC Genomics 13:271. 2012
  2. pmc Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
    Shinichi Sunagawa
    School of Natural Sciences, University of California, Merced, CA 95344, USA
    BMC Genomics 10:258. 2009
  3. pmc Role of septins in the orientation of forespore membrane extension during sporulation in fission yeast
    Masayuki Onishi
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Mol Cell Biol 30:2057-74. 2010
  4. pmc Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Exp Biol 215:3467-77. 2012
  5. pmc Fulcrum: condensing redundant reads from high-throughput sequencing studies
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    Bioinformatics 28:1324-7. 2012

Research Grants

Collaborators

Detail Information

Publications5

  1. pmc Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, CA 94025, USA
    BMC Genomics 13:271. 2012
    ..Investigating the symbiosis using an experimentally tractable model organism, such as the small sea anemone Aiptasia, should improve our understanding of exactly how the environmental stressors affect coral survival and growth...
  2. pmc Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
    Shinichi Sunagawa
    School of Natural Sciences, University of California, Merced, CA 95344, USA
    BMC Genomics 10:258. 2009
    ..a system that is gaining popularity as a model to study cellular, molecular, and genomic questions related to cnidarian-dinoflagellate symbioses...
  3. pmc Role of septins in the orientation of forespore membrane extension during sporulation in fission yeast
    Masayuki Onishi
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Mol Cell Biol 30:2057-74. 2010
    ..Thus, septins appear to form a scaffold that helps to guide the oriented extension of the FSM...
  4. pmc Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Exp Biol 215:3467-77. 2012
    ..Taken together, the results suggest that glucose is the major translocated metabolite in dinoflagellate-cnidarian symbiosis and that the release of glycerol from isolated algae may be part of a stress response...
  5. pmc Fulcrum: condensing redundant reads from high-throughput sequencing studies
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    Bioinformatics 28:1324-7. 2012
    ..Ultra-high-throughput sequencing produces duplicate and near-duplicate reads, which can consume computational resources in downstream applications. A tool that collapses such reads should reduce storage and assembly complications and costs...

Research Grants3

  1. MORPHOGENESIS AND CYTOKINESIS IN THE YEAST CELL CYCLE
    John Pringle; Fiscal Year: 2007
    ..and associate with the plasma membrane? What other proteins do they organize at the cell cortex? What are the roles of the septins both in ordinary cytokinesis and in the specialized process by which spores are formed? ..