John R Pringle

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305
    G3 (Bethesda) 4:277-95. 2014
  2. pmc Distinct roles of Rho1, Cdc42, and Cyk3 in septum formation and abscission during yeast cytokinesis
    Masayuki Onishi
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Cell Biol 202:311-29. 2013
  3. pmc Apparent defect in yeast bud-site selection due to a specific failure to splice the pre-mRNA of a regulator of cell-type-specific transcription
    Shanshan Tuo
    Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 7:e47621. 2012
  4. pmc Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, CA 94025, USA
    BMC Genomics 13:271. 2012
  5. pmc Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
    Shinichi Sunagawa
    School of Natural Sciences, University of California, Merced, CA 95344, USA
    BMC Genomics 10:258. 2009
  6. pmc Role of Inn1 and its interactions with Hof1 and Cyk3 in promoting cleavage furrow and septum formation in S. cerevisiae
    Ryuichi Nishihama
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Cell Biol 185:995-1012. 2009
  7. pmc Role of endocytosis in localization and maintenance of the spatial markers for bud-site selection in yeast
    Shanshan Tuo
    Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 8:e72123. 2013
  8. ncbi request reprint Coral bleaching independent of photosynthetic activity
    Dimitri Tolleter
    Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
    Curr Biol 23:1782-6. 2013
  9. pmc Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Exp Biol 215:3467-77. 2012
  10. pmc Fulcrum: condensing redundant reads from high-throughput sequencing studies
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    Bioinformatics 28:1324-7. 2012

Research Grants

Collaborators

Detail Information

Publications12

  1. pmc Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, Stanford, California 94305
    G3 (Bethesda) 4:277-95. 2014
    ....
  2. pmc Distinct roles of Rho1, Cdc42, and Cyk3 in septum formation and abscission during yeast cytokinesis
    Masayuki Onishi
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Cell Biol 202:311-29. 2013
    ..This work suggests a general role for the catalytically inactive transglutaminases of fungi and animals, some of which have previously been implicated in cytokinesis. ..
  3. pmc Apparent defect in yeast bud-site selection due to a specific failure to splice the pre-mRNA of a regulator of cell-type-specific transcription
    Shanshan Tuo
    Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 7:e47621. 2012
    ....
  4. pmc Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida
    Erik M Lehnert
    Department of Genetics, Stanford University School of Medicine, CA 94025, USA
    BMC Genomics 13:271. 2012
    ..Investigating the symbiosis using an experimentally tractable model organism, such as the small sea anemone Aiptasia, should improve our understanding of exactly how the environmental stressors affect coral survival and growth...
  5. pmc Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont
    Shinichi Sunagawa
    School of Natural Sciences, University of California, Merced, CA 95344, USA
    BMC Genomics 10:258. 2009
    ..a system that is gaining popularity as a model to study cellular, molecular, and genomic questions related to cnidarian-dinoflagellate symbioses...
  6. pmc Role of Inn1 and its interactions with Hof1 and Cyk3 in promoting cleavage furrow and septum formation in S. cerevisiae
    Ryuichi Nishihama
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Cell Biol 185:995-1012. 2009
    ..Thus, Inn1 and Cyk3 appear to cooperate in activating Chs2 for PS formation, which allows coordination of AMR contraction with ingression of the cleavage furrow...
  7. pmc Role of endocytosis in localization and maintenance of the spatial markers for bud-site selection in yeast
    Shanshan Tuo
    Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America
    PLoS ONE 8:e72123. 2013
    ....
  8. ncbi request reprint Coral bleaching independent of photosynthetic activity
    Dimitri Tolleter
    Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
    Curr Biol 23:1782-6. 2013
    ..Elucidation of this pathway should help to clarify bleaching mechanisms under the more usual conditions of heat stress in the light...
  9. pmc Evidence that glucose is the major transferred metabolite in dinoflagellate-cnidarian symbiosis
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    J Exp Biol 215:3467-77. 2012
    ..Taken together, the results suggest that glucose is the major translocated metabolite in dinoflagellate-cnidarian symbiosis and that the release of glycerol from isolated algae may be part of a stress response...
  10. pmc Fulcrum: condensing redundant reads from high-throughput sequencing studies
    Matthew S Burriesci
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    Bioinformatics 28:1324-7. 2012
    ..Ultra-high-throughput sequencing produces duplicate and near-duplicate reads, which can consume computational resources in downstream applications. A tool that collapses such reads should reduce storage and assembly complications and costs...
  11. pmc New insights into the phylogenetic distribution and evolutionary origins of the septins
    Ryuichi Nishihama
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Biol Chem 392:681-7. 2011
    ..This distribution and the details of the non-opisthokont septin sequences appear to require major revisions to hypotheses about the origins and early evolution of the septins...
  12. pmc Role of septins in the orientation of forespore membrane extension during sporulation in fission yeast
    Masayuki Onishi
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Mol Cell Biol 30:2057-74. 2010
    ..Thus, septins appear to form a scaffold that helps to guide the oriented extension of the FSM...

Research Grants3

  1. MORPHOGENESIS AND CYTOKINESIS IN THE YEAST CELL CYCLE
    John Pringle; Fiscal Year: 2007
    ..and associate with the plasma membrane? What other proteins do they organize at the cell cortex? What are the roles of the septins both in ordinary cytokinesis and in the specialized process by which spores are formed? ..