Nader Pourmand

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Direct electrical detection of DNA synthesis
    Nader Pourmand
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA
    Proc Natl Acad Sci U S A 103:6466-70. 2006
  2. pmc Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays
    Nader Pourmand
    Stanford Genome Technology Center, Palo Alto, CA 94304, USA
    Proc Natl Acad Sci U S A 104:6146-51. 2007
  3. pmc Rapid and highly informative diagnostic assay for H5N1 influenza viruses
    Nader Pourmand
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America
    PLoS ONE 1:e95. 2006
  4. doi request reprint Suspension bead array branch migration displacement assay for rapid STR analysis
    Andrea Villablanca
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA
    Electrophoresis 29:4109-14. 2008
  5. pmc PathogenMip assay: a multiplex pathogen detection assay
    Michael S Akhras
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America
    PLoS ONE 2:e223. 2007
  6. pmc Sentinel-base DNA genotyping using multiple sequencing primers for high-risk human papillomaviruses
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    Mol Cell Probes 20:230-8. 2006
  7. pmc Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection
    Andy C Mak
    Stanford Genome Technology Center, Stanford University, 855 California Ave, Palo Alto, CA 94304, USA
    Biosens Bioelectron 25:1635-9. 2010
  8. pmc PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
    Sreedevi Thiyagarajan
    Stanford University, Palo Alto, CA, USA
    BMC Bioinformatics 7:500. 2006
  9. pmc Current rectification with poly-l-lysine-coated quartz nanopipettes
    Senkei Umehara
    Stanford Genome Technology Center, Department of Biochemistry, Stanford University School of Medicine, Stanford University, 855 California Avenue, Palo Alto, California 94304, USA
    Nano Lett 6:2486-92. 2006
  10. pmc Detection of point mutations associated with antibiotic resistance in Pseudomonas aeruginosa
    Neda Gorgani
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA
    Int J Antimicrob Agents 34:414-8. 2009

Collaborators

Detail Information

Publications31

  1. pmc Direct electrical detection of DNA synthesis
    Nader Pourmand
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA
    Proc Natl Acad Sci U S A 103:6466-70. 2006
    ..Based on current understanding of polarizable interfaces, we propose that the electrode detects proton removal from the 3'-hydroxyl group of the DNA molecule during phosphodiester bond formation...
  2. pmc Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays
    Nader Pourmand
    Stanford Genome Technology Center, Palo Alto, CA 94304, USA
    Proc Natl Acad Sci U S A 104:6146-51. 2007
    ..Our technique will facilitate the rapid deduction of identity, length, and number of repeats for the multiple STRs in an unknown DNA sample...
  3. pmc Rapid and highly informative diagnostic assay for H5N1 influenza viruses
    Nader Pourmand
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America
    PLoS ONE 1:e95. 2006
    ..Knowledge of the predicted functional sequences of the HA will enhance H5N1 avian influenza surveillance efforts...
  4. doi request reprint Suspension bead array branch migration displacement assay for rapid STR analysis
    Andrea Villablanca
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA
    Electrophoresis 29:4109-14. 2008
    ..The multiplex, bead-based approach provides a high-throughput and more portable STR analysis...
  5. pmc PathogenMip assay: a multiplex pathogen detection assay
    Michael S Akhras
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America
    PLoS ONE 2:e223. 2007
    ....
  6. pmc Sentinel-base DNA genotyping using multiple sequencing primers for high-risk human papillomaviruses
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    Mol Cell Probes 20:230-8. 2006
    ..These proof-of-concept studies establish the assay to be accurate, reliable, rapid, flexible, and cost-effective, providing evidence of the feasibility this technique for use in clinical settings...
  7. pmc Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection
    Andy C Mak
    Stanford Genome Technology Center, Stanford University, 855 California Ave, Palo Alto, CA 94304, USA
    Biosens Bioelectron 25:1635-9. 2010
    ..Here we demonstrate the simultaneous detection of multiple mycotoxins (aflatoxins B(1), zearalenone and HT-2) and show that a detection limit of 50 pg/mL can be achieved...
  8. pmc PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
    Sreedevi Thiyagarajan
    Stanford University, Palo Alto, CA, USA
    BMC Bioinformatics 7:500. 2006
    ..The system can harness the genetic variability available in an entire genome in designing specific probes for the detection of multiple co-infections in a single tube using a MIP assay...
  9. pmc Current rectification with poly-l-lysine-coated quartz nanopipettes
    Senkei Umehara
    Stanford Genome Technology Center, Department of Biochemistry, Stanford University School of Medicine, Stanford University, 855 California Avenue, Palo Alto, California 94304, USA
    Nano Lett 6:2486-92. 2006
    ..This surface condition dependence can be used as the fundamental principle of multi-purpose real-time in vivo biosensors...
  10. pmc Detection of point mutations associated with antibiotic resistance in Pseudomonas aeruginosa
    Neda Gorgani
    Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA
    Int J Antimicrob Agents 34:414-8. 2009
    ..Results of this study suggest Pyrosequencing as a substitute for traditional methods as it provides a rapid and reliable technique for determining the antibiotic resistance pattern of a given bacterial strain in <1 h...
  11. ncbi request reprint Determination of hepatitis C virus genotype by Pyrosequencing
    Elahe Elahi
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    J Virol Methods 109:171-6. 2003
    ..For rapid population-specific HCV subtyping, a multiplex assay was developed. This study demonstrates the suitability of this technology for low-cost, high throughput and accurate microbial genotyping...
  12. ncbi request reprint Single DNA molecule detection using nanopipettes and nanoparticles
    Miloslav Karhanek
    Department of Biochemistry, Stanford Genome Technology Center, Stanford University, Stanford, CA 94304, USA
    Nano Lett 5:403-7. 2005
    ....
  13. pmc Multiplex protein assays based on real-time magnetic nanotag sensing
    Sebastian J Osterfeld
    Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA
    Proc Natl Acad Sci U S A 105:20637-40. 2008
    ..The multianalyte ability, sensitivity, scalability, and ease of use of the MNT-based protein assay technology make it a strong contender for versatile and portable molecular diagnostics in both research and clinical settings...
  14. pmc Giant magnetoresistive biochip for DNA detection and HPV genotyping
    Liang Xu
    Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305 4045, USA
    Biosens Bioelectron 24:99-103. 2008
    ..This is the first demonstration of magnetic DNA detection using plasmid-derived samples. This study provides a direct proof that GMR sensors can be used for biomedical applications...
  15. pmc Methodological improvements of pyrosequencing technology
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    J Biotechnol 124:504-11. 2006
    ..In this study, these issues have been addressed to increase signal quality and assure sequence accuracy...
  16. pmc Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications
    Michael S Akhras
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America
    PLoS ONE 2:e915. 2007
    ..For the readers' convenience, we also provide an on-line tutorial with user-interface software application CIP creator 1.0.1, for custom probe generation from virtually any new or established primer-pairs...
  17. ncbi request reprint Genotyping African haplotypes in ATM using a co-spotted single-base extension assay
    Maneesh Jain
    Stanford Genome Technology Center, Palo Alto, California 94304, USA
    Hum Mutat 22:214-21. 2003
    ..Arrayed SBE was a robust tool for this analysis that could be applied to any situation requiring the genotyping of a few SNPs in many individuals...
  18. pmc Simultaneous measurement of nonlinearity and electrochemical impedance for protein sensing using two-tone excitation
    Jonathan S Daniels
    Stanford Genome Technology Center, Stanford University Dept of Biochemistry, USA
    Conf Proc IEEE Eng Med Biol Soc 2008:5753-6. 2008
    ..We demonstrate that changes in nonlinearity can discriminate protein binding. Our measurements suggest that target binding can alter nonlinearity via the voltage dependence of the ionic double layer...
  19. pmc The relationship between human papillomavirus status and other molecular prognostic markers in head and neck squamous cell carcinomas
    Christina S Kong
    Department of Pathology, Stanford University, Santa Cruz, CA, USA
    Int J Radiat Oncol Biol Phys 74:553-61. 2009
    ....
  20. pmc Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    Electrophoresis 27:3042-7. 2006
    ..Although more automation and quality control measures are needed, Pyrosequencing was shown to be a fast and convenient method for determining short stretches of DNA sequence...
  21. pmc Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, USA
    J Mol Diagn 7:198-205. 2005
    ..The multiple sequencing primer method has proved to be a multifaceted approach for typing of human papillomaviruses by DNA sequencing technologies...
  22. pmc Detection of gyrA mutations associated with ciprofloxacin resistance in Neisseria gonorrhoeae by rapid and reliable pre-programmed short DNA sequencing
    Baback Gharizadeh
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    Int J Antimicrob Agents 26:486-90. 2005
    ..The new method used in the present study has the potential for rapid and reliable identification of known as well as previously unknown drug resistance mutations...
  23. pmc p16(INK4A) immunohistochemical staining may be helpful in distinguishing branchial cleft cysts from cystic squamous cell carcinomas originating in the oropharynx
    Reetesh K Pai
    Department of Pathology, Stanford University, Stanford, CA 94305, USA
    Cancer 117:108-19. 2009
    ..We investigated p16(INK4A) expression in branchial cleft cysts and its utility in distinguishing branchial cleft cysts from metastatic head and neck squamous cell carcinomas (SCCs) in fine-needle aspiration biopsies (FNABs)...
  24. pmc Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays
    Arjang Hassibi
    Center for Integrated Systems, Stanford University, Stanford, CA, USA
    Biophys Chem 116:175-85. 2005
    ..Sensitivity is not constrained by detector performance but rather by background bioluminescence caused by contamination by either PPi or ATP (adenosine triphosphate)...
  25. ncbi request reprint Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms
    Hossein Fakhrai-Rad
    Stanford Genome Technology Center, Stanford University, Palo Alto, California, USA
    Hum Mutat 19:479-85. 2002
    ..In addition, we describe new schemes for template preparation and multiplexing as an effort for cost reduction in large-scale studies...
  26. pmc Fisher's theorems for multivariable, time- and space-dependent systems, with applications in population genetics and chemical kinetics
    Marcel O Vlad
    Department of Chemistry, Stanford University, Stanford, CA 94305 5080, USA
    Proc Natl Acad Sci U S A 102:9848-53. 2005
    ....
  27. pmc Molecular probe technology detects bacteria without culture
    Richard W Hyman
    Departments of Biochemistry, Stanford University, Stanford, CA, USA
    BMC Microbiol 12:29. 2012
    ..In this communication, we report the first results of employing our molecular probes to detect bacteria in clinical samples...
  28. pmc Multiplex Pyrosequencing
    Nader Pourmand
    Stanford Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto, CA 94304, USA
    Nucleic Acids Res 30:e31. 2002
    ..Here, we demonstrate the use of this multiplex Pyrosequencing for single nucleotide polymorphisms genotyping and microbial typing...
  29. pmc DNA-functionalized MFe2O4 (M = Fe, Co, or Mn) nanoparticles and their hybridization to DNA-functionalized surfaces
    David B Robinson
    IBM T J Watson Research Center, Yorktown Heights, New York 10598, USA
    Langmuir 21:3096-103. 2005
    ..These particles may find valuable applications involving the magnetic detection of small numbers of biomolecules using spin valves, magnetic tunnel junctions, or other sensors...
  30. ncbi request reprint Patterns of known and novel small RNAs in human cervical cancer
    Weng Onn Lui
    Department of Pathology, Stanford University School of Medicine, Stanford, California 94305 5324, USA
    Cancer Res 67:6031-43. 2007
    ..In addition to the known miRNAs, we found a number of novel miRNAs and an additional set of small RNAs that do not meet miRNA criteria...
  31. pmc Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains
    Robert G Eason
    Stanford Genome Technology Center, 855 California Avenue, Palo Alto, CA 94304, USA
    Proc Natl Acad Sci U S A 101:11046-51. 2004
    ..The robust performance of the yeast gene-deletion dual oligonucleotide bar-code design in array hybridization validates the use of molecular bar codes in living cells for tracking their growth phenotype...