Research Topics
| Arthur R GrossmanSummaryAffiliation: Stanford University Country: USA Publications
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Publications
Novel metabolism in Chlamydomonas through the lens of genomicsArthur R Grossman
Department of Plant Biology, The Carnegie Institution, 260 Panama Street, Stanford, California 94305, USA
Curr Opin Plant Biol 10:190-8. 2007....- In the grip of algal genomicsArthur R Grossman
The Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
Adv Exp Med Biol 616:54-76. 2007.... 
Paths toward algal genomicsArthur R Grossman
The Carnegie Institution, Department of Plant Biology, Stanford, California 94305, USA
Plant Physiol 137:410-27. 2005- Multiple facets of anoxic metabolism and hydrogen production in the unicellular green alga Chlamydomonas reinhardtiiArthur R Grossman
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
New Phytol 190:279-88. 2011.... - Chlamydomonas reinhardtii in the landscape of pigmentsArthur R Grossman
The Carnegie Institution of Washington, Department of Plant Biology, Stanford, California 94305, USA
Annu Rev Genet 38:119-73. 2004..These areas of research have become especially attractive for intensive development with the application of potent molecular and genomic tools currently being applied to studies of C. reinhardtii... - Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulationArthur R Grossman
Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA 94305, USA
Photosynth Res 106:3-17. 2010.... 
Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial matAnne Soisig Steunou
Department of Plant Biology, The Carnegie Institution, Stanford University, Stanford, CA, USA
ISME J 2:364-78. 2008..These results are discussed with respect to the energetics and regulation of N2 fixation in hot spring mats and factors that can markedly influence the extent of N2 fixation over the diel cycle...- Altered fermentative metabolism in Chlamydomonas reinhardtii mutants lacking pyruvate formate lyase and both pyruvate formate lyase and alcohol dehydrogenaseClaudia Catalanotti
Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA
Plant Cell 24:692-707. 2012.... - Genome-based approaches to understanding phosphorus deprivation responses and PSR1 control in Chlamydomonas reinhardtiiJeffrey L Moseley
Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, California 94305, USA
Eukaryot Cell 5:26-44. 2006.... - A mutant in the ADH1 gene of Chlamydomonas reinhardtii elicits metabolic restructuring during anaerobiosisLeonardo Magneschi
Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA
Plant Physiol 158:1293-305. 2012.... - Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction, and metabolic pathwaysFlorence Mus
Department of Plant Biology, Carnegie Institution, Stanford, California 94305, USA
J Biol Chem 282:25475-86. 2007.... - Phosphorus deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial matsMelissa M Adams
Carnegie Institution for Science, Department of Plant Biology, Stanford University, Stanford, CA 94305, USA
J Bacteriol 190:8171-84. 2008..Once acclimated, the cells grew rapidly in fresh medium with methylphosphonate as the only source of phosphorus. The possible implications of these results are discussed with respect to the ecophysiology of the microbial mats... - Genetic interactions between regulators of Chlamydomonas phosphorus and sulfur deprivation responsesJeffrey L Moseley
Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA
Genetics 181:889-905. 2009..Overall, the work strongly suggests integration of the different circuits that control nutrient-deprivation responses in Chlamydomonas... - Identification and regulation of plasma membrane sulfate transporters in ChlamydomonasWirulda Pootakham
Department of Biology, Stanford University, Stanford, California 94305 5020, USA
Plant Physiol 153:1653-68. 2010..Finally, mutants identified for each of the S-deprivation-responsive transporters were used to establish their critical role in the transport of SO(4)(2-) into S-deprived cells... - Phototropin involvement in the expression of genes encoding chlorophyll and carotenoid biosynthesis enzymes and LHC apoproteins in Chlamydomonas reinhardtiiChung Soon Im
Department of Plant Biology, Carnegie Institution, Stanford, CA 94306, USA
Plant J 48:1-16. 2006.... - Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analysesDevaki Bhaya
Department of Plant Biology, Carnegie Institution, Stanford, CA 94305, USA
ISME J 1:703-13. 2007.... - Binding of cysteine synthase to the STAS domain of sulfate transporter and its regulatory consequencesNakako Shibagaki
Department of Plant Biology, The Carnegie Institution for Science, Stanford, California 94305, USA
J Biol Chem 285:25094-102. 2010..These observations suggest a regulatory model in which interactions between SULTR1;2 and OASTL coordinate internalization of SO(4)(2-) with the energetic/metabolic state of plant root cells... - Generation of an oligonucleotide array for analysis of gene expression in Chlamydomonas reinhardtiiStephan Eberhard
Department of Plant Biology, The Carnegie Institution, 260 Panama Street, Stanford, CA, 94305, USA
Curr Genet 49:106-24. 2006.... - Responses of a thermophilic Synechococcus isolate from the microbial mat of Octopus Spring to lightOliver Kilian
Department of Plant Biology, Carnegie Institution, Stanford, CA 94305, USA
Appl Environ Microbiol 73:4268-78. 2007..The results are discussed in the context of how Synechococcus OS-B' may cope with high light irradiances in the high-temperature environment of the microbial mat... - Direct extraction of photosynthetic electrons from single algal cells by nanoprobing systemWonHyoung Ryu
Department of Mechanical Engineering, Stanford University, Stanford, California 94305, USA
Nano Lett 10:1137-43. 2010..This result may represent an initial step in generating "high efficiency" bioelectricity by directly harvesting high energy photosynthetic electrons... - A novel two domain-fusion protein in cyanobacteria with similarity to the CAB/ELIP/HLIP superfamily: evolutionary implications and regulationOliver Kilian
Department of Plant Biology, The Carnegie Institution, Stanford, CA 94305, USA
Mol Plant 1:155-66. 2008..This additional TMH is very similar to a conserved hypothetical, single membrane-spanning polypeptide present in most cyanobacteria. The evolutionary significance of these results is discussed... - A major light-harvesting polypeptide of photosystem II functions in thermal dissipationDafna Elrad
Department of Biological Sciences, Stanford University, Stanford, CA 94305, USA
Plant Cell 14:1801-16. 2002..Both physiological and molecular characterization of the npq5 mutant suggest that most thermal dissipation within LHCII of Chlamydomonas is dependent on the peripherally associated trimeric LHC polypeptides... - RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survivalDavid Gonzalez-Ballester
Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA
Plant Cell 22:2058-84. 2010.... 
EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptomeMonica Jain
The Carnegie Institution, Department of Plant Biology, Stanford, CA 94305, USA
Nucleic Acids Res 35:2074-83. 2007..Our protocol, although developed for and tailored to the C. reinhardtii dataset, can be exploited by any eukaryotic genome project for which both a draft genome sequence and ESTs are available...- The central role of a SNRK2 kinase in sulfur deprivation responsesDavid Gonzalez-Ballester
Department of Plant Biology, Carnegie Institution, Stanford, CA 94305, USA
Plant Physiol 147:216-27. 2008..1 in the signaling cascade critical for eliciting S deprivation responses in Chlamydomonas. The phylogenetic relationships and structures of the eight members of the SNRK2 family in Chlamydomonas are discussed... - Insights into the acclimation of Chlamydomonas reinhardtii to sulfur deprivationSteve V Pollock
Department of Plant Biology, The Carnegie Institution, 260 Panama Street, Stanford, CA 94305, USA
Photosynth Res 86:475-89. 2005..reinhardtii. A speculative model, incorporating the activities of established regulatory elements with putative novel components of the signal transduction pathway(s) is discussed... - The role of the STAS domain in the function and biogenesis of a sulfate transporter as probed by random mutagenesisNakako Shibagaki
Department of Plant Biology, The Carnegie Institution, Stanford, California 94305, USA
J Biol Chem 281:22964-73. 2006..These results suggest that the STAS domain is critical for both the activity and biosynthesis/stability of the transporter, and that STAS sub-domains correlate with these specific functions... - Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expressionZhaoduo Zhang
Department of Plant Biology, The Carnegie Institute, 260 Panama St, Stanford, CA 94305, USA
Eukaryot Cell 3:1331-48. 2004..These results suggest various strategies used by photosynthetic organisms during acclimation to nutrient-limited growth... - The LPB1 gene is important for acclimation of Chlamydomonas reinhardtii to phosphorus and sulfur deprivationChiung Wen Chang
Department of Plant Biology, Carnegie Institution of Washington, Stanford, California 94305, USA
Plant Physiol 138:319-29. 2005.... - Alternative pathways for phosphonate metabolism in thermophilic cyanobacteria from microbial matsMaría R Gómez-García
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
ISME J 5:141-9. 2011.... - A novel analytical method for in vivo phosphate trackingHong Gu
Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
FEBS Lett 580:5885-93. 2006..FLIPPi sensors are suitable for real-time monitoring of P(i) metabolism in living cells, providing a new tool for fluxomics, analysis of pathophysiology or changes of P(i) during cell migration... - Reverse genetics in Chlamydomonas: a platform for isolating insertional mutantsDavid Gonzalez-Ballester
Department of Plant Biology, The Carnegie Institution for Science, Stanford, CA 94305, USA
Plant Methods 7:24. 2011.... - Identification and regulation of high light-induced genes in Chlamydomonas reinhardtiiChung Soon Im
Department of Plant Biology, The Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305, USA
Plant J 30:301-13. 2002..In contrast, there was little effect of DCMU or lesions that block photosynthetic electron transport on the activity of genes that were specifically controlled by high light... - Chlamydomonas reinhardtii at the crossroads of genomicsArthur R Grossman
The Carnegie Institution of Washington, Department of Plant Biology, Stanford, California 94305. Biology Department, Duke University, Durham, North Carolina 27708, USA
Eukaryot Cell 2:1137-50. 2003 - Consequences of a deletion in dspA on transcript accumulation in Synechocystis sp. strain PCC6803Chao Jung Tu
Department of Plant Biology, The Carnegie Institution of Washington, 260 Panama St, Stanford, CA 94305, USA
J Bacteriol 186:3889-902. 2004..g., high-light exposure) even when maintained at near-optimal growth conditions for wild-type cells. This is discussed with respect to the importance of DspA for regulating the responses of the cell to environmental cues... - Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophoraEva C M Nowack
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
Proc Natl Acad Sci U S A 109:5340-5. 2012..chromatophora as an exceptional model in which to study early events in organellogenesis, and suggests that protein import into bacterial endosymbionts might be a phenomenon much more widespread than currently assumed... - Probing the function of STAS domains of the Arabidopsis sulfate transportersNakako Shibagaki
Department of Plant Biology, The Carnegie Institution of Washington, Stanford, California 94305, USA
J Biol Chem 279:30791-9. 2004.... - In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial matsAnne Soisig Steunou
Department of Plant Biology, The Carnegie Institution, 260 Panama Street, Stanford, CA 94305, USA
Proc Natl Acad Sci U S A 103:2398-403. 2006..In a broader context, our data suggest that there are critical regulatory switches in situ that are linked to the diel cycle and that these switches alter many metabolic processes within the microbial mat... - Open micro-fluidic system for atomic force microscopy-guided in situ electrochemical probing of a single cellWonHyoung Ryu
Department of Mechanical Engineering, Stanford University, Stanford, CA 94305, USA
Lab Chip 8:1460-7. 2008..The OMFC was further studied using simulation packages for optimal design conditions. This system was successfully used to measure light-dependent oxidation currents of a few pico-amperes from the green alga Chlamydomonas reinhardtii... - Multiple light inputs control phototaxis in Synechocystis sp. strain PCC6803Wing On Ng
Department of Plant Biology, Carnegie Institution of Washington, Stanford, California 94305, USA
J Bacteriol 185:1599-607. 2003..These results suggest that while positive phototaxis is controlled by the red light photoreceptor TaxD1, negative phototaxis in Synechocystis sp. strain PCC6803 is mediated by one or more (as yet) unidentified blue light photoreceptors... - Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtiiMartin Lohr
Institut für Allgemeine Botanik Johannes Gutenberg Universität, 55099 Mainz, Germany
Plant Physiol 138:490-515. 2005..This work is directing us toward the exploration of the role of specific photoreceptors in the biosynthesis of pigments and the coordination of pigment biosynthesis with the synthesis of proteins of the photosynthetic apparatus... - The Chlamydomonas genome reveals the evolution of key animal and plant functionsSabeeha S Merchant
Department of Chemistry and Biochemistry, University of California at Los Angeles, Los Angeles, CA 90095, USA
Science 318:245-50. 2007.... - In vivo characterization of diatom multipartite plastid targeting signalsKirk E Apt
Martek Biosciences Corp, 6480 Dobbin Rd, Columbia, MD 21045, USA
J Cell Sci 115:4061-9. 2002..Our data strongly support the hypothesis of a multi-step plastid targeting process in chromophytic algae and raises questions about the continuity of the ER and CER and the function of the latter in polypeptide trafficking... - AplA, a member of a new class of phycobiliproteins lacking a traditional role in photosynthetic light harvestingBeronda L Montgomery
Department of Biology, Indiana University, 1001 E. Third St, Bloomington, IN 47405, USA
J Bacteriol 186:7420-8. 2004..Thus, Apl proteins are a new class of photoreceptors with a different cellular location and structure than any previously described members of the phycobiliprotein superfamily... - Elimination of high-light-inducible polypeptides related to eukaryotic chlorophyll a/b-binding proteins results in aberrant photoacclimation in Synechocystis PCC6803Michel Havaux
CEA Cadarache, DSV, DEVM, laboratoire d écophysiologie de la photosynthèse, UMR 163 CNRS CEA, Univ Méditerranée CEA 1000, F 13108 Saint Paul lez Durance, France
Biochim Biophys Acta 1557:21-33. 2003..The data are consistent with the idea that HLIPs are involved, through a direct or indirect means, in nonphotochemical dissipation of absorbed light energy... - Chlamydomonas reinhardtii genome project. A guide to the generation and use of the cDNA informationJeff Shrager
Biology Department, Duke University, Durham, North Carolina 27708, USA
Plant Physiol 131:401-8. 2003..We also discuss preliminary results in which the different cDNA libraries are used to identify genes that are potentially differentially expressed... - nblS, a gene involved in controlling photosynthesis-related gene expression during high light and nutrient stress in Synechococcus elongatus PCC 7942Lorraine G van Waasbergen
Department of Biology, University of Texas at Arlington, Arlington, Texas 76019, USA
J Bacteriol 184:2481-90. 2002..Thus, the NblS protein is involved in the control of a number of processes critical for altering the photosynthetic apparatus in response to both HL and nutrient stress conditions... - RcaE is a complementary chromatic adaptation photoreceptor required for green and red light responsivenessKazuki Terauchi
Department of Biology, Indiana University, Bloomington, IN 47405, USA
Mol Microbiol 51:567-77. 2004.... - Control of photosynthetic and high-light-responsive genes by the histidine kinase DspA: negative and positive regulation and interactions between signal transduction pathwaysHui-Yi Hsiao
Department of Applied Science, University of Arkansas at Little Rock, Little Rock, AR 72204, USA
J Bacteriol 186:3882-8. 2004..Burnap, B. L. Postier, and A. R. Grossman, J. Bacteriol. 186:3889-3902, 2004), suggest that DspA acts as a global regulator that helps coordinate cellular metabolism with growth limitations imposed by environmental conditions...