Research Topics
| Jane GrimwoodSummaryAffiliation: Stanford University Country: USA Publications
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Detail Information
Publications
The DNA sequence and biology of human chromosome 19Jane Grimwood
Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
Nature 428:529-35. 2004....- Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin allelesPamela F Colosimo
Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305-5329, USA
Science 307:1928-33. 2005.... - The DNA sequence and comparative analysis of human chromosome 5Jeremy Schmutz
Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Ave, Palo Alto, California 94304, USA
Nature 431:268-74. 2004..These duplications are very recent evolutionary events and probably have a mechanistic role in human physiological variation, as deletions in these regions are the cause of debilitating disorders including spinal muscular atrophy... 
Coelacanth genome sequence reveals the evolutionary history of vertebrate genesJames P Noonan
Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA
Genome Res 14:2397-405. 2004..Our results indicate that coelacanth provides the ideal outgroup sequence against which tetrapod genomes can be measured. We therefore present L. menadoensis as a candidate for whole-genome sequencing...- The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosomeCatherine L Peichel
Department of Developmental Biology and Howard Hughes Medical Institute, Stanford University School of Medicine, Palo Alto, CA 94305, USA
Curr Biol 14:1416-24. 2004..Here, we investigate the genetic and chromosomal mechanisms that underlie sex determination in the threespine stickleback (Gasterosteus aculeatus)... - The genomic basis of adaptive evolution in threespine sticklebacksFelicity C Jones
Department of Developmental Biology, Beckman Center B300, Stanford University School of Medicine, Stanford California 94305, USA
Nature 484:55-61. 2012..Both coding and regulatory changes occur in the set of loci underlying marine-freshwater evolution, but regulatory changes appear to predominate in this well known example of repeated adaptive evolution in nature... - Quality assessment of the human genome sequenceJeremy Schmutz
Stanford Human Genome Center, Department of Genetics, Stanford University School of Medicine, 975 California Avenue, Palo Alto, California 94304, USA
Nature 429:365-8. 2004..The completed study covers the major contributing sequencing centres and is based on a rigorous combination of laboratory experiments and computational analysis... - Gene conversion and the evolution of protocadherin gene cluster diversityJames P Noonan
Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120, USA
Genome Res 14:354-66. 2004..We propose that the combination of lineage-specific duplication, restricted gene conversion, and adaptive variation in diversified ectodomains drives vertebrate protocadherin cluster evolution... - A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacksFelicity C Jones
Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
Curr Biol 22:83-90. 2012.... - Sequence finishingJeremy Schmutz
Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
Methods Mol Biol 255:333-42. 2004 - Quality assessment of finished BAC sequencesJeremy Schmutz
Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
Methods Mol Biol 255:343-9. 2004 - Assembly of DNA sequencing dataJeremy Schmutz
Department of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA
Methods Mol Biol 255:319-32. 2004 - Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency responseJamie A O'Rourke
Department of Genetics, Developmental and Cellular Biology, Iowa State University, Ames, Iowa 50011, USA
BMC Genomics 10:376. 2009..To better understand the effect of iron availability on soybean yield, we identified genes in two near isogenic lines with changes in expression patterns when plants were grown in iron sufficient and iron deficient conditions... - Extensive linkage disequilibrium, a common 16.7-kilobase deletion, and evidence of balancing selection in the human protocadherin alpha clusterJames P Noonan
Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
Am J Hum Genet 72:621-35. 2003..This deletion appears in unaffected individuals from multiple populations, suggesting that a reduction in protocadherin gene number is not obviously deleterious...