Eugene Fratkin

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. ncbi request reprint MotifCut: regulatory motifs finding with maximum density subgraphs
    Eugene Fratkin
    Department of Computer Science, Stanford University, California 94305, USA
    Bioinformatics 22:e150-7. 2006
  2. pmc A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
    Brian T Naughton
    Department of Biochemistry, Stanford University, CA 94305, USA
    Nucleic Acids Res 34:5730-9. 2006
  3. pmc Effect of genetic divergence in identifying ancestral origin using HAPAA
    Andreas Sundquist
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 18:676-82. 2008

Detail Information

Publications3

  1. ncbi request reprint MotifCut: regulatory motifs finding with maximum density subgraphs
    Eugene Fratkin
    Department of Computer Science, Stanford University, California 94305, USA
    Bioinformatics 22:e150-7. 2006
    ....
  2. pmc A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
    Brian T Naughton
    Department of Biochemistry, Stanford University, CA 94305, USA
    Nucleic Acids Res 34:5730-9. 2006
    ..We elucidate the reasons why we expect graph-based methods to perform well on motif data. Our MotifScan algorithm shows greatly improved performance over the prevalent PSSM-based method for the detection of eukaryotic motifs...
  3. pmc Effect of genetic divergence in identifying ancestral origin using HAPAA
    Andreas Sundquist
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 18:676-82. 2008
    ..Using HAPAA, we explore the limits of ancestry inference in closely related populations...