Jason Flannick

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Using multiple alignments to improve seeded local alignment algorithms
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94304, USA
    Nucleic Acids Res 33:4563-77. 2005
  2. pmc Automatic parameter learning for multiple local network alignment
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94305, USA
    J Comput Biol 16:1001-22. 2009
  3. pmc Graemlin: general and robust alignment of multiple large interaction networks
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 16:1169-81. 2006
  4. doi request reprint A universal carrier test for the long tail of Mendelian disease
    Balaji S Srinivasan
    Counsyl, Redwood Shores, CA, USA
    Reprod Biomed Online 21:537-51. 2010

Collaborators

  • Serafim Batzoglou
  • Chuong B Do
  • Balaji S Srinivasan
  • James Lee
  • Eric A Evans
  • Tuan Pham
  • Amit Kaushal
  • A Scott Patterson
  • Jessica L Jacobson
  • Pasquale Patrizio
  • Sharon Young
  • Christopher C Chang

Detail Information

Publications4

  1. pmc Using multiple alignments to improve seeded local alignment algorithms
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94304, USA
    Nucleic Acids Res 33:4563-77. 2005
    ..This suggests that when applied on a whole-genome scale, Typhon should provide improved homology searches in time comparable to existing algorithms...
  2. pmc Automatic parameter learning for multiple local network alignment
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94305, USA
    J Comput Biol 16:1001-22. 2009
    ..We show that, on each of these datasets, Graemlin 2.0 has higher sensitivity and specificity than existing network aligners. Graemlin 2.0 is available under the GNU public license at http://graemlin.stanford.edu ...
  3. pmc Graemlin: general and robust alignment of multiple large interaction networks
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 16:1169-81. 2006
    ..We find that Graemlin achieves substantial scalability gains over previous methods while improving sensitivity...
  4. doi request reprint A universal carrier test for the long tail of Mendelian disease
    Balaji S Srinivasan
    Counsyl, Redwood Shores, CA, USA
    Reprod Biomed Online 21:537-51. 2010
    ..Moreover, given that the assay is inexpensive and requires only a saliva sample, it is now increasingly feasible to make carrier testing a routine part of preconception care...