Jason Flannick

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. ncbi Using multiple alignments to improve seeded local alignment algorithms
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94304, USA
    Nucleic Acids Res 33:4563-77. 2005
  2. ncbi Automatic parameter learning for multiple local network alignment
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94305, USA
    J Comput Biol 16:1001-22. 2009
  3. ncbi Graemlin: general and robust alignment of multiple large interaction networks
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 16:1169-81. 2006
  4. ncbi A universal carrier test for the long tail of Mendelian disease
    Balaji S Srinivasan
    Counsyl, Redwood Shores, CA, USA
    Reprod Biomed Online 21:537-51. 2010

Collaborators

  • Serafim Batzoglou
  • Chuong B Do
  • Balaji S Srinivasan
  • Jessica L Jacobson
  • Amit Kaushal
  • James Lee
  • Eric A Evans
  • Tuan Pham
  • Christopher C Chang
  • Sharon Young
  • A Scott Patterson
  • Pasquale Patrizio

Detail Information

Publications4

  1. ncbi Using multiple alignments to improve seeded local alignment algorithms
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94304, USA
    Nucleic Acids Res 33:4563-77. 2005
    ..This suggests that when applied on a whole-genome scale, Typhon should provide improved homology searches in time comparable to existing algorithms...
  2. ncbi Automatic parameter learning for multiple local network alignment
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, CA 94305, USA
    J Comput Biol 16:1001-22. 2009
    ..We show that, on each of these datasets, Graemlin 2.0 has higher sensitivity and specificity than existing network aligners. Graemlin 2.0 is available under the GNU public license at http://graemlin.stanford.edu ...
  3. ncbi Graemlin: general and robust alignment of multiple large interaction networks
    Jason Flannick
    Department of Computer Science, Stanford University, Stanford, California 94305, USA
    Genome Res 16:1169-81. 2006
    ..We find that Graemlin achieves substantial scalability gains over previous methods while improving sensitivity...
  4. ncbi A universal carrier test for the long tail of Mendelian disease
    Balaji S Srinivasan
    Counsyl, Redwood Shores, CA, USA
    Reprod Biomed Online 21:537-51. 2010
    ..Moreover, given that the assay is inexpensive and requires only a saliva sample, it is now increasingly feasible to make carrier testing a routine part of preconception care...