J M Cherry

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
    Rama Balakrishnan
    Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 33:D374-7. 2005
  2. pmc Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome
    Jodi E Hirschman
    Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 34:D442-5. 2006
  3. pmc Genetic and physical maps of Saccharomyces cerevisiae
    J M Cherry
    Department of Genetics, Stanford University School of Medicine, California 94305 5120, USA
    Nature 387:67-73. 1997
  4. pmc SGD: Saccharomyces Genome Database
    J M Cherry
    Department of Genetics, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 26:73-9. 1998
  5. pmc The Stanford Microarray Database
    G Sherlock
    Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305 5163, USA
    Nucleic Acids Res 29:152-5. 2001
  6. ncbi request reprint Visualization of expression clusters using Sammon's non-linear mapping
    R M Ewing
    Carnegie Institution of Washington, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
    Bioinformatics 17:658-9. 2001

Collaborators

  • D Botstein
  • Kara Dolinski
  • P O Brown
  • R M Ewing
  • Renate Schmidt
  • GAVIN J contact SHERLOCK
  • Jodi E Hirschman
  • Rama Balakrishnan
  • Selina S Dwight
  • Marek Skrzypek
  • Anand Sethuraman
  • Karen R Christie
  • Shuai Weng
  • Stacia R Engel
  • Rose Oughtred
  • Christopher Lane
  • Qing Dong
  • Robert Nash
  • Eurie L Hong
  • Chandra L Theesfeld
  • Dianna G Fisk
  • Maria C Costanzo
  • Gail Binkley
  • Mark Schroeder
  • Stuart Miyasato
  • Michael S Livstone
  • Barry Starr
  • Rey Andrada
  • Julie Park
  • Mayank K Thanawala
  • Jennifer Williams

Detail Information

Publications6

  1. pmc Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
    Rama Balakrishnan
    Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 33:D374-7. 2005
    ..cerevisiae protein, the single most similar protein from several model organisms and presents links to the database pages of those proteins, facilitating access to curated information about potential orthologs of yeast proteins...
  2. pmc Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome
    Jodi E Hirschman
    Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 34:D442-5. 2006
    ..Detailed lists are accessible through SGD's Advanced Search tool (http://db.yeastgenome.org/cgi-bin/search/featureSearch), and all the data presented on this page are available from the SGD ftp site (ftp://ftp.yeastgenome.org/yeast/)...
  3. pmc Genetic and physical maps of Saccharomyces cerevisiae
    J M Cherry
    Department of Genetics, Stanford University School of Medicine, California 94305 5120, USA
    Nature 387:67-73. 1997
    ..The data for the maps are accessible electronically from the Saccharomyces Genome Database (SGD: http://genome-www.stanford. edu/Saccharomyces/)...
  4. pmc SGD: Saccharomyces Genome Database
    J M Cherry
    Department of Genetics, Stanford University, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 26:73-9. 1998
    ..SGD can be accessed via the World Wide Web at http://genome-www.stanford.edu/Saccharomyces/..
  5. pmc The Stanford Microarray Database
    G Sherlock
    Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305 5163, USA
    Nucleic Acids Res 29:152-5. 2001
    ..S., Lowe,T.M. and Tolstoshev,C.M. (1993) Nature Genet., 4, 332-333] and SWISS-PROT [Bairoch,A. and Apweiler,R. (2000) Nucleic Acids Res., 28, 45-48] and can be accessed at http://genome-www.stanford.edu/microarray...
  6. ncbi request reprint Visualization of expression clusters using Sammon's non-linear mapping
    R M Ewing
    Carnegie Institution of Washington, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
    Bioinformatics 17:658-9. 2001
    ..A method of exploratory analysis and visualization of multi-dimensional gene expression data using Sammon's Non-Linear Mapping (NLM) is presented...