Martha B Arnaud

Summary

Affiliation: Stanford University
Country: USA

Publications

  1. pmc The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 40:D667-74. 2012
  2. pmc The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 40:D653-9. 2012
  3. pmc New tools at the Candida Genome Database: biochemical pathways and full-text literature search
    Marek S Skrzypek
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 38:D428-32. 2010
  4. pmc The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 38:D420-7. 2010
  5. pmc Sequence resources at the Candida Genome Database
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 35:D452-6. 2007
  6. pmc The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny
    Jonathan Binkley
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 42:D711-6. 2014
  7. pmc The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
    Gustavo C Cerqueira
    Broad Institute of Harvard and MIT, 7 Cambridge Center, Cambridge, MA 02141, USA Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA
    Nucleic Acids Res 42:D705-10. 2014
  8. ncbi request reprint The Candida Genome Database: facilitating research on Candida albicans molecular biology
    Maria C Costanzo
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    FEMS Yeast Res 6:671-84. 2006
  9. pmc Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    BMC Microbiol 13:91. 2013
  10. pmc Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, California, USA
    Eukaryot Cell 12:101-8. 2013

Collaborators

Detail Information

Publications12

  1. pmc The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 40:D667-74. 2012
    ..All of these data are freely available at http://www.candidagenome.org/. We welcome feedback from the research community at candida-curator@lists.stanford.edu...
  2. pmc The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 40:D653-9. 2012
    ..AspGD also provides resources to foster interaction and dissemination of community information and resources. We welcome and encourage feedback at aspergillus-curator@lists.stanford.edu...
  3. pmc New tools at the Candida Genome Database: biochemical pathways and full-text literature search
    Marek S Skrzypek
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 38:D428-32. 2010
    ..Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies...
  4. pmc The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 38:D420-7. 2010
    ..All of these data are freely available at http://www.aspgd.org. We welcome feedback from users and the research community at aspergillus-curator@genome.stanford.edu...
  5. pmc Sequence resources at the Candida Genome Database
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 35:D452-6. 2007
    ..CGD is freely accessible at http://www.candidagenome.org/ and CGD curators may be contacted by email at candida-curator@genome.stanford.edu...
  6. pmc The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny
    Jonathan Binkley
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 42:D711-6. 2014
    ....
  7. pmc The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
    Gustavo C Cerqueira
    Broad Institute of Harvard and MIT, 7 Cambridge Center, Cambridge, MA 02141, USA Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA
    Nucleic Acids Res 42:D705-10. 2014
    ....
  8. ncbi request reprint The Candida Genome Database: facilitating research on Candida albicans molecular biology
    Maria C Costanzo
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 5120, USA
    FEMS Yeast Res 6:671-84. 2006
    ....
  9. pmc Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    BMC Microbiol 13:91. 2013
    ....
  10. pmc Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans
    Diane O Inglis
    Department of Genetics, Stanford University Medical School, Stanford, California, USA
    Eukaryot Cell 12:101-8. 2013
    ..albicans genes at the intersection of biofilm formation, filamentous growth, pathogenesis, and phenotypic switching of this opportunistic fungal pathogen, which provides a compelling list of candidates for further experimentation...
  11. pmc Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans
    Martha B Arnaud
    Department of Genetics, Stanford University Medical School, Stanford, CA 94305 5120, USA
    Trends Microbiol 17:295-303. 2009
    ..We also discuss how sequence information combined with GO facilitates the transfer of knowledge across related species and the challenges and opportunities that such an approach presents...
  12. pmc The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
    Martha B Arnaud
    Department of Genetics, Stanford University School of Medicine, CCSR 2255, 269 Campus Drive, Stanford, CA 94305 5120, USA
    Nucleic Acids Res 33:D358-63. 2005
    ..CGD is publicly funded (by NIH grant R01 DE15873-01 from the NIDCR) and is freely available at http://www.candidagenome.org/...