Michelle L Green

Summary

Affiliation: SRI International
Country: USA

Publications

  1. pmc A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
    Michelle L Green
    Bioinformatics Research Group, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    BMC Bioinformatics 5:76. 2004
  2. pmc Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
    M L Green
    Bioinformatics Research Group, Artificial Intelligence Center, SRI International Menlo Park, CA 94025, USA
    Nucleic Acids Res 33:4035-9. 2005
  3. pmc The outcomes of pathway database computations depend on pathway ontology
    M L Green
    Bioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA 94025, USA
    Nucleic Acids Res 34:3687-97. 2006
  4. pmc Computational prediction of human metabolic pathways from the complete human genome
    Pedro Romero
    Bioinformatics Research Group, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    Genome Biol 6:R2. 2005
  5. ncbi request reprint Using genome-context data to identify specific types of functional associations in pathway/genome databases
    Michelle L Green
    Bioinformatics Research Group, SRI International, Menlo Park, CA 94025, USA
    Bioinformatics 23:i205-11. 2007
  6. ncbi request reprint A multidomain TIGR/olfactomedin protein family with conserved structural similarity in the N-terminal region and conserved motifs in the C-terminal region
    Michelle L Green
    Stanford Medical Informatics, Stanford University School of Medicine, Stanford, California 94305 5479, USA
    Mol Cell Proteomics 1:394-403. 2002

Detail Information

Publications6

  1. pmc A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
    Michelle L Green
    Bioinformatics Research Group, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    BMC Bioinformatics 5:76. 2004
    ..If a protein has not been assigned a specific function during the annotation process, any reaction catalyzed by that protein will appear as a missing enzyme or pathway hole in a Pathway/Genome database...
  2. pmc Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers
    M L Green
    Bioinformatics Research Group, Artificial Intelligence Center, SRI International Menlo Park, CA 94025, USA
    Nucleic Acids Res 33:4035-9. 2005
    ..These errors affect scientists who use these DBs as online encyclopedias and they affect bioinformaticists who use these DBs to train and validate newly developed algorithms...
  3. pmc The outcomes of pathway database computations depend on pathway ontology
    M L Green
    Bioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA 94025, USA
    Nucleic Acids Res 34:3687-97. 2006
    ....
  4. pmc Computational prediction of human metabolic pathways from the complete human genome
    Pedro Romero
    Bioinformatics Research Group, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    Genome Biol 6:R2. 2005
    ..Pathway assignments place genes in their larger biological context, and are a necessary first step toward quantitative modeling of metabolism...
  5. ncbi request reprint Using genome-context data to identify specific types of functional associations in pathway/genome databases
    Michelle L Green
    Bioinformatics Research Group, SRI International, Menlo Park, CA 94025, USA
    Bioinformatics 23:i205-11. 2007
    ..This algorithm performs with varying degrees of accuracy on each type of relationship, and performs best in predicting pathway and protein complex relationships...
  6. ncbi request reprint A multidomain TIGR/olfactomedin protein family with conserved structural similarity in the N-terminal region and conserved motifs in the C-terminal region
    Michelle L Green
    Stanford Medical Informatics, Stanford University School of Medicine, Stanford, California 94305 5479, USA
    Mol Cell Proteomics 1:394-403. 2002
    ..Additionally, we have identified a group of chitinase sequences containing several of the highly conserved motifs present in the C-terminal region of the olfactomedin domain-containing sequences...