J D Coates

Summary

Affiliation: Southern Illinois University
Country: USA

Publications

  1. ncbi request reprint Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
    J D Coates
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Evol Microbiol 51:581-8. 2001
  2. ncbi request reprint Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Nature 411:1039-43. 2001
  3. ncbi request reprint Anaerobic benzene biodegradation--a new era
    John D Coates
    Department of Plant and Microbial Biology, University College Berkeley, Berkeley, CA 94720, USA
    Res Microbiol 153:621-8. 2002
  4. pmc Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration
    John D Coates
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:2445-52. 2002
  5. ncbi request reprint Emerging techniques for anaerobic bioremediation of contaminated environments
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale IL 62901, USA
    Trends Biotechnol 18:408-12. 2000
  6. pmc Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria
    J D Coates
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 65:5234-41. 1999
  7. ncbi request reprint Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Bacteriol 49:1615-22. 1999
  8. pmc Recovery of humic-reducing bacteria from a diversity of environments
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Appl Environ Microbiol 64:1504-9. 1998
  9. ncbi request reprint Anaerobic biooxidation of Fe(II) by Dechlorosoma suillum
    J G Lack
    Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
    Microb Ecol 43:424-31. 2002
  10. ncbi request reprint Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position
    L A Achenbach
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Evol Microbiol 51:527-33. 2001

Collaborators

  • Karrie A Weber
  • D R Lovley
  • E E Roden
  • Michael J McInerney
  • Philip Hugenholtz
  • M R Mormile
  • Eoin L Brodie
  • J Cameron Thrash
  • Laurie A Achenbach
  • Romy Chakraborty
  • Kelly S Bender
  • Susan M O'Connor
  • Yvonne Sun
  • Jarrod Pollock
  • J Ian Van Trump
  • Kathryne G Byrne-Bailey
  • Tamas Torok
  • R Chakraborty
  • James Ian Van Trump
  • Swades K Chaudhuri
  • Kelly C Wrighton
  • J G Lack
  • L A Achenbach
  • S K Chaudhuri
  • Ruth L Gustavson
  • Max L Coleman
  • Joseph G Lack
  • Sarir Ahmadi
  • Saumyaditya Bose
  • Trisha L Spanbauer
  • Antinea H Chair
  • Traci Knox
  • Olga Chertkov
  • Lacey L Westphal
  • Nadia Ali
  • Falk Warnecke
  • Gary L Andersen
  • Todd Z DeSantis
  • Peter Agbo
  • Elisabeth Miller
  • Joe Lack
  • Emily Chan
  • Sara M Belchik
  • Ching Shang
  • William H Fugate
  • Melissa R Rice
  • Magali Ader
  • Swades Chaudhuri
  • Shelly D Kelly
  • Kenneth M Kemner
  • U Michaelidou
  • J Fryman
  • R A Bruce

Detail Information

Publications39

  1. ncbi request reprint Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
    J D Coates
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Evol Microbiol 51:581-8. 2001
    ..In addition, Geobacter hydrogenophilus and Geobacter grbiciae were able to oxidize aromatic compounds such as benzoate, whilst Geobacter grbiciae was also able to use the monoaromatic hydrocarbon toluene...
  2. ncbi request reprint Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Nature 411:1039-43. 2001
    ..This is the first example, to our knowledge, of an organism of any type that can oxidize benzene anaerobically, and we demonstrate the potential applicability of these organisms to the treatment of contaminated environments...
  3. ncbi request reprint Anaerobic benzene biodegradation--a new era
    John D Coates
    Department of Plant and Microbial Biology, University College Berkeley, Berkeley, CA 94720, USA
    Res Microbiol 153:621-8. 2002
    ..However, it is difficult to envision how phenol would be formed if benzene is alkylated to toluene. As such, it is possible that diverse mechanisms for anaerobic benzene degradation may be operative in different anaerobic microorganisms...
  4. pmc Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration
    John D Coates
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:2445-52. 2002
    ..This study represents the first description of HS-oxidizing isolates and demonstrates that microorganisms capable of HS oxidation are phylogenetically diverse...
  5. ncbi request reprint Emerging techniques for anaerobic bioremediation of contaminated environments
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale IL 62901, USA
    Trends Biotechnol 18:408-12. 2000
    ..Here, we summarize recent advances in the understanding of novel forms of anaerobic microbial metabolism and their potential application to bioremediative technologies...
  6. pmc Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria
    J D Coates
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 65:5234-41. 1999
    ....
  7. ncbi request reprint Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Bacteriol 49:1615-22. 1999
    ..It is proposed that strain H-5T represents a novel genus in the Holophaga-Acidobacterium phylum and that it should be named Geothrix fermentans sp. nov., gen. nov...
  8. pmc Recovery of humic-reducing bacteria from a diversity of environments
    J D Coates
    Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
    Appl Environ Microbiol 64:1504-9. 1998
    ..These studies demonstrate that the potential for microbial humic substance reduction can be found in a wide variety of sediment types and suggest that Geobacteraceae species might be important humic-reducing organisms in sediments...
  9. ncbi request reprint Anaerobic biooxidation of Fe(II) by Dechlorosoma suillum
    J G Lack
    Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
    Microb Ecol 43:424-31. 2002
    ..suillum is significantly different from previously described forms of nitrate-dependent microbial Fe(II) oxidation...
  10. ncbi request reprint Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position
    L A Achenbach
    Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
    Int J Syst Evol Microbiol 51:527-33. 2001
    ..The type species and strains for these new genera are Dechloromonas agitata strain CKBT and Dechlorosoma suillum strain PST, respectively...
  11. pmc Biogenic magnetite formation through anaerobic biooxidation of Fe(II)
    S K Chaudhuri
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 67:2844-8. 2001
    ..Here, we report on magnetite formation by biooxidation of Fe(II) coupled to denitrification. This metabolism offers an alternative environmental source of biogenic magnetite...
  12. ncbi request reprint Humics as an electron donor for anaerobic respiration
    D R Lovley
    Department of Microbiology, University of Massachusetts, Amherst 01003, USA
    Environ Microbiol 1:89-98. 1999
    ..These results suggest that, as microbially reduced humics enter less reduced zones of soils and sediments, the reduced humics may serve as electron donors for microbial reduction of several environmentally significant electron acceptors...
  13. ncbi request reprint Novel forms of anaerobic respiration of environmental relevance
    D R Lovley
    Department of Microbiology, University of Massachusetts, Amherst, 01003, USA
    Curr Opin Microbiol 3:252-6. 2000
    ..Furthermore, anaerobic respiration is becoming increasing recognized as a strategy for the remediation of organic and metal contaminants in the subsurface...
  14. ncbi request reprint Anaerobic degradation of monoaromatic hydrocarbons
    R Chakraborty
    Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA
    Appl Microbiol Biotechnol 64:437-46. 2004
    ..Many of these biochemical pathways produce unique extracellular intermediates that can be utilized as biomarkers for the monitoring of hydrocarbon degradation in anaerobic natural environments...
  15. pmc Environmental factors that control microbial perchlorate reduction
    Swades K Chaudhuri
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:4425-30. 2002
    ..A microbial treatment strategy can achieve and maintain perchlorate concentrations below the recommended regulatory level, but only in environments in which the variables described above can be controlled...
  16. ncbi request reprint Bioremediation of metal contamination
    D R Lovley
    Department of Microbiology, University of Massachusetts, Amherst 01003, USA
    Curr Opin Biotechnol 8:285-9. 1997
    ..Bioremediation of metals is still primarily a research problem with little large-scale application of this technology...
  17. pmc Identification, characterization, and classification of genes encoding perchlorate reductase
    Kelly S Bender
    Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
    J Bacteriol 187:5090-6. 2005
    ..The separation of perchlorate reductase as an activity distinct from chlorate reductase was further supported by DNA hybridization analysis of (per)chlorate- and chlorate-reducing strains using the pcrA gene as a probe...
  18. pmc Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe
    Kelly S Bender
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:4820-6. 2002
    ..agitata cld probe demonstrated the conservation of the cld gene among perchlorate-reducing bacteria. This study represents the first description of a functional gene associated with microbial perchlorate reduction...
  19. pmc Description of the novel perchlorate-reducing bacteria Dechlorobacter hydrogenophilus gen. nov., sp. nov.and Propionivibrio militaris, sp. nov
    J Cameron Thrash
    Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
    Appl Microbiol Biotechnol 86:335-43. 2010
    ..The names Dechlorobacter hydrogenophilus gen. nov., sp. nov and Propionivibrio militaris sp. nov. are proposed...
  20. pmc Metabolic primers for detection of (Per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences
    Kelly S Bender
    Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
    Appl Environ Microbiol 70:5651-8. 2004
    ..Comparisons of the cld and 16S ribosomal DNA (rDNA) gene trees indicated that the cld gene does not track 16S rDNA phylogeny, further implicating the possible role of horizontal transfer in the evolution of (per)chlorate respiration...
  21. doi request reprint Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002
    Karrie A Weber
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    Appl Microbiol Biotechnol 83:555-65. 2009
    ..Nitrate, nitrite, nitrous oxide, and oxygen also served as terminal electron acceptors with acetate as the electron donor...
  22. pmc Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor
    J Cameron Thrash
    Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
    Appl Environ Microbiol 76:4730-7. 2010
    ..DNA-DNA hybridization with strain WD confirmed VDY(T) as a separate species (46.2% identity), and the name Magnetospirillum bellicus sp. nov. (DSM 21662, ATCC BAA-1730) is proposed...
  23. pmc Anaerobic nitrate-dependent iron(II) bio-oxidation by a novel lithoautotrophic betaproteobacterium, strain 2002
    Karrie A Weber
    University of California, Department of Plant and Microbial Biology, 271 Koshland Hall, Berkeley, CA, USA
    Appl Environ Microbiol 72:686-94. 2006
    ..Our studies further demonstrate the abundance of nitrate-dependent Fe(II) oxidizers in freshwater lake sediments and provide further evidence for the potential of microbially mediated Fe(II) oxidation in anoxic environments...
  24. pmc Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas strain RCB
    Romy Chakraborty
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    Appl Environ Microbiol 71:8649-55. 2005
    ..The results of these studies emphasize the unique metabolic versatility of this organism, highlighting its potential applicability to bioremediative technologies...
  25. pmc Hydroxylation and carboxylation--two crucial steps of anaerobic benzene degradation by Dechloromonas strain RCB
    Romy Chakraborty
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    Appl Environ Microbiol 71:5427-32. 2005
    ..The outcome of these studies also suggests that all anaerobic benzene-degrading microorganisms, regardless of their terminal electron acceptor, may use this pathway...
  26. ncbi request reprint Microbial perchlorate reduction: rocket-fueled metabolism
    John D Coates
    Department of Plant and Microbial Biology, 271 Koshland Hall, University of California, Berkeley, California 94720, USA
    Nat Rev Microbiol 2:569-80. 2004
  27. pmc Immobilization of radionuclides and heavy metals through anaerobic bio-oxidation of Fe(II)
    Joseph G Lack
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:2704-10. 2002
    ..The results of this study demonstrate the potential of this novel approach for stabilization and immobilization of HMR in the environment...
  28. ncbi request reprint Microbial interactions with humic substances
    J Ian Van Trump
    Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
    Adv Appl Microbiol 60:55-96. 2006
  29. pmc Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY
    Kathryne G Byrne-Bailey
    Department of Plant and Microbiology, University of California, Berkeley, CA 94720, USA
    J Bacteriol 192:1475-6. 2010
    ..Preliminary protein annotation revealed an organism optimized for survival in a complex environmental system. Here, we briefly report the completed and annotated genome sequence of strain TPSY...
  30. pmc Universal immunoprobe for (per)chlorate-reducing bacteria
    Susan M O'Connor
    Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
    Appl Environ Microbiol 68:3108-13. 2002
    ....
  31. pmc Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptors
    Yvonne Sun
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    Appl Microbiol Biotechnol 84:955-63. 2009
    ..It clearly demonstrates attraction toward chlorine oxyanions and the unique ability of these organisms to distinguish structurally analogous compounds, nitrate, chlorate, and perchlorate and respond accordingly...
  32. doi request reprint Thermodynamic targeting of microbial perchlorate reduction by selective electron donors
    James Ian Van Trump
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    ISME J 3:466-76. 2009
    ..This observation could help improve enhanced in situ bioremediation of perchlorate by negating many of the detrimental aspects of biofouling...
  33. pmc Biological control of hog waste odor through stimulated microbial Fe(III) reduction
    John D Coates
    Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
    Appl Environ Microbiol 71:4728-35. 2005
    ....
  34. doi request reprint A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells
    Kelly C Wrighton
    Department of Plant and Microbial Biology, University of California, Berkeley CA 94720, USA
    ISME J 2:1146-56. 2008
    ..Consequently, we revealed a previously unidentified functional role for Gram-positive bacteria in MFC current generation...
  35. ncbi request reprint Review: Direct and indirect electrical stimulation of microbial metabolism
    J Cameron Thrash
    Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley California 94720, USA
    Environ Sci Technol 42:3921-31. 2008
    ..Additionally, the essential flexibility of BERs offers an almost unlimited range of solutions for metabolic stimulation and downstream application...
  36. ncbi request reprint Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp. isolated from salt flat sediments of Soap Lake
    Jarrod Pollock
    University of California, Berkeley, CA 94720, USA
    Appl Microbiol Biotechnol 77:927-34. 2007
    ....
  37. ncbi request reprint Electrochemical stimulation of microbial perchlorate reduction
    J Cameron Thrash
    Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
    Environ Sci Technol 41:1740-6. 2007
    ..This has important implications for the continuous treatment of this critical contaminant in industrial waste streams and drinking water...
  38. ncbi request reprint Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction
    Karrie A Weber
    Department of Plant and Microbial Biology, 271 Koshland Hall, University of California, Berkeley, Berkeley, California 94720, USA
    Nat Rev Microbiol 4:752-64. 2006
    ..Furthermore, the metabolic versatility of the microorganisms involved in these reactions has resulted in the development of biotechnological applications to remediate contaminated environments and harvest energy...
  39. pmc Microbial isotopic fractionation of perchlorate chlorine
    Max L Coleman
    Postgraduate Research Institute for Sedimentology, The University of Reading, Reading, United Kingdom
    Appl Environ Microbiol 69:4997-5000. 2003
    ..This can be used to quantify the extent of biotic degradation and to separate biotic from abiotic attenuation of this contaminant...