Research Topics
| J D CoatesSummaryAffiliation: Southern Illinois University Country: USA Publications
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Detail Information
Publications
Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducersJ D Coates
Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
Int J Syst Evol Microbiol 51:581-8. 2001..In addition, Geobacter hydrogenophilus and Geobacter grbiciae were able to oxidize aromatic compounds such as benzoate, whilst Geobacter grbiciae was also able to use the monoaromatic hydrocarbon toluene...- Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of DechloromonasJ D Coates
Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
Nature 411:1039-43. 2001..This is the first example, to our knowledge, of an organism of any type that can oxidize benzene anaerobically, and we demonstrate the potential applicability of these organisms to the treatment of contaminated environments... - Anaerobic benzene biodegradation--a new eraJohn D Coates
Department of Plant and Microbial Biology, University College Berkeley, Berkeley, CA 94720, USA
Res Microbiol 153:621-8. 2002..However, it is difficult to envision how phenol would be formed if benzene is alkylated to toluene. As such, it is possible that diverse mechanisms for anaerobic benzene degradation may be operative in different anaerobic microorganisms... 
Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respirationJohn D Coates
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 68:2445-52. 2002..This study represents the first description of HS-oxidizing isolates and demonstrates that microorganisms capable of HS oxidation are phylogenetically diverse...- Emerging techniques for anaerobic bioremediation of contaminated environmentsJ D Coates
Department of Microbiology, Southern Illinois University, Carbondale IL 62901, USA
Trends Biotechnol 18:408-12. 2000..Here, we summarize recent advances in the understanding of novel forms of anaerobic microbial metabolism and their potential application to bioremediative technologies... - Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteriaJ D Coates
Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 65:5234-41. 1999.... - Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquiferJ D Coates
Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
Int J Syst Bacteriol 49:1615-22. 1999..It is proposed that strain H-5T represents a novel genus in the Holophaga-Acidobacterium phylum and that it should be named Geothrix fermentans sp. nov., gen. nov... - Recovery of humic-reducing bacteria from a diversity of environmentsJ D Coates
Department of Microbiology, Southern Illinois University, Carbondale 62901, USA
Appl Environ Microbiol 64:1504-9. 1998..These studies demonstrate that the potential for microbial humic substance reduction can be found in a wide variety of sediment types and suggest that Geobacteraceae species might be important humic-reducing organisms in sediments... - Anaerobic biooxidation of Fe(II) by Dechlorosoma suillumJ G Lack
Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
Microb Ecol 43:424-31. 2002..suillum is significantly different from previously described forms of nitrate-dependent microbial Fe(II) oxidation... - Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic positionL A Achenbach
Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA
Int J Syst Evol Microbiol 51:527-33. 2001..The type species and strains for these new genera are Dechloromonas agitata strain CKBT and Dechlorosoma suillum strain PST, respectively... - Biogenic magnetite formation through anaerobic biooxidation of Fe(II)S K Chaudhuri
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 67:2844-8. 2001..Here, we report on magnetite formation by biooxidation of Fe(II) coupled to denitrification. This metabolism offers an alternative environmental source of biogenic magnetite... - Humics as an electron donor for anaerobic respirationD R Lovley
Department of Microbiology, University of Massachusetts, Amherst 01003, USA
Environ Microbiol 1:89-98. 1999..These results suggest that, as microbially reduced humics enter less reduced zones of soils and sediments, the reduced humics may serve as electron donors for microbial reduction of several environmentally significant electron acceptors... - Novel forms of anaerobic respiration of environmental relevanceD R Lovley
Department of Microbiology, University of Massachusetts, Amherst, 01003, USA
Curr Opin Microbiol 3:252-6. 2000..Furthermore, anaerobic respiration is becoming increasing recognized as a strategy for the remediation of organic and metal contaminants in the subsurface... - Anaerobic degradation of monoaromatic hydrocarbonsR Chakraborty
Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA
Appl Microbiol Biotechnol 64:437-46. 2004..Many of these biochemical pathways produce unique extracellular intermediates that can be utilized as biomarkers for the monitoring of hydrocarbon degradation in anaerobic natural environments... - Environmental factors that control microbial perchlorate reductionSwades K Chaudhuri
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 68:4425-30. 2002..A microbial treatment strategy can achieve and maintain perchlorate concentrations below the recommended regulatory level, but only in environments in which the variables described above can be controlled... - Bioremediation of metal contaminationD R Lovley
Department of Microbiology, University of Massachusetts, Amherst 01003, USA
Curr Opin Biotechnol 8:285-9. 1997..Bioremediation of metals is still primarily a research problem with little large-scale application of this technology... - Identification, characterization, and classification of genes encoding perchlorate reductaseKelly S Bender
Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
J Bacteriol 187:5090-6. 2005..The separation of perchlorate reductase as an activity distinct from chlorate reductase was further supported by DNA hybridization analysis of (per)chlorate- and chlorate-reducing strains using the pcrA gene as a probe... - Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probeKelly S Bender
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 68:4820-6. 2002..agitata cld probe demonstrated the conservation of the cld gene among perchlorate-reducing bacteria. This study represents the first description of a functional gene associated with microbial perchlorate reduction... - Description of the novel perchlorate-reducing bacteria Dechlorobacter hydrogenophilus gen. nov., sp. nov.and Propionivibrio militaris, sp. novJ Cameron Thrash
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
Appl Microbiol Biotechnol 86:335-43. 2010..The names Dechlorobacter hydrogenophilus gen. nov., sp. nov and Propionivibrio militaris sp. nov. are proposed... - Metabolic primers for detection of (Per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequencesKelly S Bender
Department of Microbiology, Southern Illinois University, Carbondale, IL 62901, USA
Appl Environ Microbiol 70:5651-8. 2004..Comparisons of the cld and 16S ribosomal DNA (rDNA) gene trees indicated that the cld gene does not track 16S rDNA phylogeny, further implicating the possible role of horizontal transfer in the evolution of (per)chlorate respiration... 
Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002Karrie A Weber
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
Appl Microbiol Biotechnol 83:555-65. 2009..Nitrate, nitrite, nitrous oxide, and oxygen also served as terminal electron acceptors with acetate as the electron donor...- Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactorJ Cameron Thrash
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA
Appl Environ Microbiol 76:4730-7. 2010..DNA-DNA hybridization with strain WD confirmed VDY(T) as a separate species (46.2% identity), and the name Magnetospirillum bellicus sp. nov. (DSM 21662, ATCC BAA-1730) is proposed... - Anaerobic nitrate-dependent iron(II) bio-oxidation by a novel lithoautotrophic betaproteobacterium, strain 2002Karrie A Weber
University of California, Department of Plant and Microbial Biology, 271 Koshland Hall, Berkeley, CA, USA
Appl Environ Microbiol 72:686-94. 2006..Our studies further demonstrate the abundance of nitrate-dependent Fe(II) oxidizers in freshwater lake sediments and provide further evidence for the potential of microbially mediated Fe(II) oxidation in anoxic environments... - Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas strain RCBRomy Chakraborty
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
Appl Environ Microbiol 71:8649-55. 2005..The results of these studies emphasize the unique metabolic versatility of this organism, highlighting its potential applicability to bioremediative technologies... - Hydroxylation and carboxylation--two crucial steps of anaerobic benzene degradation by Dechloromonas strain RCBRomy Chakraborty
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
Appl Environ Microbiol 71:5427-32. 2005..The outcome of these studies also suggests that all anaerobic benzene-degrading microorganisms, regardless of their terminal electron acceptor, may use this pathway... - Microbial perchlorate reduction: rocket-fueled metabolismJohn D Coates
Department of Plant and Microbial Biology, 271 Koshland Hall, University of California, Berkeley, California 94720, USA
Nat Rev Microbiol 2:569-80. 2004 - Immobilization of radionuclides and heavy metals through anaerobic bio-oxidation of Fe(II)Joseph G Lack
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 68:2704-10. 2002..The results of this study demonstrate the potential of this novel approach for stabilization and immobilization of HMR in the environment... - Microbial interactions with humic substancesJ Ian Van Trump
Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
Adv Appl Microbiol 60:55-96. 2006 - Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSYKathryne G Byrne-Bailey
Department of Plant and Microbiology, University of California, Berkeley, CA 94720, USA
J Bacteriol 192:1475-6. 2010..Preliminary protein annotation revealed an organism optimized for survival in a complex environmental system. Here, we briefly report the completed and annotated genome sequence of strain TPSY... - Universal immunoprobe for (per)chlorate-reducing bacteriaJohn D Coates
Department of Microbiology, Southern Illinois University, Carbondale, Illinois 62901, USA
Appl Environ Microbiol 68:3108-13. 2002.... - Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptorsYvonne Sun
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
Appl Microbiol Biotechnol 84:955-63. 2009..It clearly demonstrates attraction toward chlorine oxyanions and the unique ability of these organisms to distinguish structurally analogous compounds, nitrate, chlorate, and perchlorate and respond accordingly... - Thermodynamic targeting of microbial perchlorate reduction by selective electron donorsJames Ian Van Trump
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
ISME J 3:466-76. 2009..This observation could help improve enhanced in situ bioremediation of perchlorate by negating many of the detrimental aspects of biofouling... - Biological control of hog waste odor through stimulated microbial Fe(III) reductionJohn D Coates
Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
Appl Environ Microbiol 71:4728-35. 2005.... - A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cellsKelly C Wrighton
Department of Plant and Microbial Biology, University of California, Berkeley CA 94720, USA
ISME J 2:1146-56. 2008..Consequently, we revealed a previously unidentified functional role for Gram-positive bacteria in MFC current generation... - Review: Direct and indirect electrical stimulation of microbial metabolismJ Cameron Thrash
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley California 94720, USA
Environ Sci Technol 42:3921-31. 2008..Additionally, the essential flexibility of BERs offers an almost unlimited range of solutions for metabolic stimulation and downstream application... - Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp. isolated from salt flat sediments of Soap LakeJarrod Pollock
University of California, Berkeley, CA 94720, USA
Appl Microbiol Biotechnol 77:927-34. 2007.... - Electrochemical stimulation of microbial perchlorate reductionJ Cameron Thrash
Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
Environ Sci Technol 41:1740-6. 2007..This has important implications for the continuous treatment of this critical contaminant in industrial waste streams and drinking water... - Microorganisms pumping iron: anaerobic microbial iron oxidation and reductionKarrie A Weber
Department of Plant and Microbial Biology, 271 Koshland Hall, University of California, Berkeley, Berkeley, California 94720, USA
Nat Rev Microbiol 4:752-64. 2006..Furthermore, the metabolic versatility of the microorganisms involved in these reactions has resulted in the development of biotechnological applications to remediate contaminated environments and harvest energy... - Microbial isotopic fractionation of perchlorate chlorineMax L Coleman
Postgraduate Research Institute for Sedimentology, The University of Reading, Reading, United Kingdom
Appl Environ Microbiol 69:4997-5000. 2003..This can be used to quantify the extent of biotic degradation and to separate biotic from abiotic attenuation of this contaminant...