Assaf Vardi

Summary

Affiliation: Rutgers University
Country: USA

Publications

  1. pmc Digital expression profiling of novel diatom transcripts provides insight into their biological functions
    Uma Maheswari
    Institut de Biologie de l Ecole Normale Supérieure, CNRS UMR 8197 Inserm U1024, Ecole Normale Superieure, 46 rue d Ulm, 75005 Paris, France
    Genome Biol 11:R85. 2010
  2. pmc Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
    Florian Maumus
    CNRS UMR8186, Biologie Moléculaire des Organismes Photosynthétiques, Ecole Normale Superieure, 75230 Paris cedex05, France
    BMC Genomics 10:624. 2009
  3. doi request reprint A diatom gene regulating nitric-oxide signaling and susceptibility to diatom-derived aldehydes
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Program, Institute of Marine and Coastal Sciences, Rutgers University, 71 Dudley Road, New Brunswick, NJ 08901, USA
    Curr Biol 18:895-9. 2008
  4. pmc Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA
    Proc Natl Acad Sci U S A 109:19327-32. 2012
  5. doi request reprint A chemical arms race at sea mediates algal host-virus interactions
    Kay D Bidle
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA
    Curr Opin Microbiol 14:449-57. 2011
  6. doi request reprint Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, 71 Dudley Road, New Brunswick, NJ 08901, USA
    Science 326:861-5. 2009
  7. pmc Diatom genomes come of age
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Program, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08540, USA
    Genome Biol 9:245. 2008
  8. pmc Apoptosis-inducing galactolipids from a cultured marine diatom, Phaeodactylum tricornutum
    Eric H Andrianasolo
    Center for Marine Biotechnology, Institute of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, New Jersey 08901 8521, USA
    J Nat Prod 71:1197-201. 2008
  9. pmc A stress surveillance system based on calcium and nitric oxide in marine diatoms
    Assaf Vardi
    Laboratory of Diatom Signalling and Morphogenesis, Ecole Normale Superieure, Paris, France
    PLoS Biol 4:e60. 2006
  10. ncbi request reprint An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms
    Andrew E Allen
    Princeton University, Department of Geosciences, Guyot Hall, Princeton, New Jersey 08540, USA
    Curr Opin Plant Biol 9:264-73. 2006

Collaborators

  • Kay D Bidle
  • Kimberlee Thamatrakoln
  • Eric H Andrianasolo
  • Paul G Falkowski
  • Eileen White
  • Chris Bowler
  • Andrew E Allen
  • E Virginia Armbrust
  • Uma Maheswari
  • Kamel Jabbari
  • Florian Maumus
  • Micaela Schnitzler Parker
  • Jean Louis Petit
  • Michael Katinka
  • Betina M Porcel
  • Jean Paul Cadoret
  • Thomas Mock
  • Pascal J Lopez
  • Marc Heijde
  • Veronique Martin-Jezequel
  • Julie La Roche
  • Agnès Meichenin
  • Jean Weissenbach
  • Alessandra De Martino
  • Raymond Kaas
  • Corinne Mhiri
  • Marie Angèle Grandbastien
  • Hanhua Hu
  • John A Berges
  • Jerzy Jurka
  • Uffe Hellsten
  • Balbir K Chaal
  • Nicholas H Putnam
  • Tijana Glavina
  • Anthony Chiovitti
  • Diego Martinez
  • Shiguo Zhou
  • Masood Z Hadi
  • Todd W Lane
  • Aubrey K Davis
  • J Chris Detter
  • Klaus Valentin
  • Monica Medina
  • Miroslav Obornik
  • David Goodstein
  • J Casey Lippmeier
  • Gregory J Pazour
  • Vladimir V Kapitonov
  • Mark A Brzezinski
  • Winnie W Y Lau
  • Michael Bechner
  • Nils Kröger
  • David C Schwartz
  • Daniel S Rokhsar
  • Anton Montsant
  • Susan Lucas
  • Paul M Richardson
  • Mark Hildebrand
  • Bethany D Jenkins
  • Brian Palenik
  • Mak A Saito
  • Tatiana A Rynearson
  • Beverley R Green
  • Mark S Demarest
  • Frank W Larimer
  • Kirk E Apt
  • Frances P Wilkerson

Detail Information

Publications11

  1. pmc Digital expression profiling of novel diatom transcripts provides insight into their biological functions
    Uma Maheswari
    Institut de Biologie de l Ecole Normale Supérieure, CNRS UMR 8197 Inserm U1024, Ecole Normale Superieure, 46 rue d Ulm, 75005 Paris, France
    Genome Biol 11:R85. 2010
    ..High throughput tools are needed, therefore, to associate functions with diatom-specific genes...
  2. pmc Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
    Florian Maumus
    CNRS UMR8186, Biologie Moléculaire des Organismes Photosynthétiques, Ecole Normale Superieure, 75230 Paris cedex05, France
    BMC Genomics 10:624. 2009
    ..The genomes of a centric diatom, Thalassiosira pseudonana, and a pennate diatom, Phaeodactylum tricornutum, that likely diverged around 90 Mya, have recently become available...
  3. doi request reprint A diatom gene regulating nitric-oxide signaling and susceptibility to diatom-derived aldehydes
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Program, Institute of Marine and Coastal Sciences, Rutgers University, 71 Dudley Road, New Brunswick, NJ 08901, USA
    Curr Biol 18:895-9. 2008
    ..NOA-like sequences were found in diverse oceanic regions, suggesting that a novel NO-based system operates in diatoms and may be widespread in phytoplankton, providing a biological context for NO in the upper ocean [10]...
  4. pmc Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA
    Proc Natl Acad Sci U S A 109:19327-32. 2012
    ..huxleyi-EhV interactions, but also elucidate promising molecular biomarkers and lipid-based proxies for phytoplankton host-virus interactions in natural systems...
  5. doi request reprint A chemical arms race at sea mediates algal host-virus interactions
    Kay D Bidle
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, USA
    Curr Opin Microbiol 14:449-57. 2011
    ....
  6. doi request reprint Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Group, Institute of Marine and Coastal Sciences, Rutgers University, 71 Dudley Road, New Brunswick, NJ 08901, USA
    Science 326:861-5. 2009
    ..These lipids were detected in coccolithophore populations in the North Atlantic, which highlights their potential as biomarkers for viral infection in the oceans...
  7. pmc Diatom genomes come of age
    Assaf Vardi
    Environmental Biophysics and Molecular Ecology Program, Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08540, USA
    Genome Biol 9:245. 2008
    ..The results of two published genome sequences from marine diatoms provide basic insights into how these remarkable organisms evolved to become one of the most successful groups of eukaryotic algae in the contemporary ocean...
  8. pmc Apoptosis-inducing galactolipids from a cultured marine diatom, Phaeodactylum tricornutum
    Eric H Andrianasolo
    Center for Marine Biotechnology, Institute of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, New Jersey 08901 8521, USA
    J Nat Prod 71:1197-201. 2008
    ..The galactolipids induce apoptosis in micromolar concentrations. This is the first report of apoptosis induction by galactolipids...
  9. pmc A stress surveillance system based on calcium and nitric oxide in marine diatoms
    Assaf Vardi
    Laboratory of Diatom Signalling and Morphogenesis, Ecole Normale Superieure, Paris, France
    PLoS Biol 4:e60. 2006
    ....
  10. ncbi request reprint An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms
    Andrew E Allen
    Princeton University, Department of Geosciences, Guyot Hall, Princeton, New Jersey 08540, USA
    Curr Opin Plant Biol 9:264-73. 2006
    ..Many aspects of nitrogen metabolism and cell signaling appear to be linked in diatoms. This new perspective provides a basis for understanding the ecological dominance of diatoms in contemporary oceans...
  11. ncbi request reprint The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism
    E Virginia Armbrust
    School of Oceanography, University of Washington, Seattle, WA 98195, USA
    Science 306:79-86. 2004
    ....