Vijayalakshmi H Nagaraj

Summary

Affiliation: Rutgers University
Country: USA

Publications

  1. pmc Combined analysis of expression data and transcription factor binding sites in the yeast genome
    Vijayalakshmi H Nagaraj
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854, USA
    BMC Genomics 5:59. 2004
  2. pmc Better estimation of protein-DNA interaction parameters improve prediction of functional sites
    Vijayalakshmi H Nagaraj
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 8020, USA
    BMC Biotechnol 8:94. 2008
  3. pmc OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif
    Amar Drawid
    BioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, NJ, USA
    BMC Bioinformatics 10:208. 2009
  4. pmc Locus dependence in epigenetic chromatin silencing
    Swagatam Mukhopadhyay
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854, USA
    Biosystems 102:49-54. 2010

Detail Information

Publications4

  1. pmc Combined analysis of expression data and transcription factor binding sites in the yeast genome
    Vijayalakshmi H Nagaraj
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854, USA
    BMC Genomics 5:59. 2004
    ....
  2. pmc Better estimation of protein-DNA interaction parameters improve prediction of functional sites
    Vijayalakshmi H Nagaraj
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854 8020, USA
    BMC Biotechnol 8:94. 2008
    ..One procedure to do that involves a modified SELEX (Systematic Evolution of Ligands by Exponential Enrichment) method designed to produce many such sequences...
  3. pmc OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif
    Amar Drawid
    BioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, NJ, USA
    BMC Bioinformatics 10:208. 2009
    ..Ignoring these features can lead to inaccurate predictions as well as incorrect design and interpretation of experimental results...
  4. pmc Locus dependence in epigenetic chromatin silencing
    Swagatam Mukhopadhyay
    BioMaPS Institute, Rutgers University, Piscataway, NJ 08854, USA
    Biosystems 102:49-54. 2010
    ..We use the structure of the bifurcation diagram of the underlying dynamical system to explain the existing single cell data in silencing by the SIR system in yeast...