Wanding Zhou

Summary

Affiliation: Rice University
Country: USA

Publications

  1. doi Quantifying and assessing the effect of chemical symmetry in metabolic pathways
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, Texas 77005, USA
    J Chem Inf Model 52:2684-96. 2012
  2. pmc Convergent evolution of modularity in metabolic networks through different community structures
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, TX, USA
    BMC Evol Biol 12:181. 2012
  3. pmc The strength of chemical linkage as a criterion for pruning metabolic graphs
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, TX, USA
    Bioinformatics 27:1957-63. 2011
  4. pmc Modeling integrated cellular machinery using hybrid Petri-Boolean networks
    Natalie Berestovsky
    Department of Computer Science, Rice University, Houston, Texas, United States of America
    PLoS Comput Biol 9:e1003306. 2013
  5. pmc Properties of metabolic graphs: biological organization or representation artifacts?
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, Texas, USA
    BMC Bioinformatics 12:132. 2011

Collaborators

Detail Information

Publications5

  1. doi Quantifying and assessing the effect of chemical symmetry in metabolic pathways
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, Texas 77005, USA
    J Chem Inf Model 52:2684-96. 2012
    ..coli , that alternative tracings originated from symmetries could give rise to considerable amount of differential conservation of atoms and distinct transition patterns of the isotopomer distribution...
  2. pmc Convergent evolution of modularity in metabolic networks through different community structures
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, TX, USA
    BMC Evol Biol 12:181. 2012
    ..However, given the dependency of the modularity score on the community structure, it remains unknown whether organisms achieve certain modularity via similar or different community structures...
  3. pmc The strength of chemical linkage as a criterion for pruning metabolic graphs
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, TX, USA
    Bioinformatics 27:1957-63. 2011
    ..Currently, this pruning process is carried out in an ad hoc fashion, resulting in discrepancies and ambiguities across studies...
  4. pmc Modeling integrated cellular machinery using hybrid Petri-Boolean networks
    Natalie Berestovsky
    Department of Computer Science, Rice University, Houston, Texas, United States of America
    PLoS Comput Biol 9:e1003306. 2013
    ..The results it produces can guide the practitioner to zoom into components and interconnections and investigate them using such more detailed mathematical models. ..
  5. pmc Properties of metabolic graphs: biological organization or representation artifacts?
    Wanding Zhou
    Department of Bioengineering, Rice University, Houston, Texas, USA
    BMC Bioinformatics 12:132. 2011
    ..Consequently, a question that naturally arises in this context is whether these properties truly reflect biological organization or are merely an artifact of the representation...