Troy Ruths

Summary

Affiliation: Rice University
Country: USA

Publications

  1. pmc Boosting forward-time population genetic simulators through genotype compression
    Troy Ruths
    Department of Computer Science, Rice University, Houston, USA
    BMC Bioinformatics 14:192. 2013
  2. pmc GS2: an efficiently computable measure of GO-based similarity of gene sets
    Troy Ruths
    Department of Computer Science, Rice University, 6100 Main Street, MS 132, Houston, TX, USA
    Bioinformatics 25:1178-84. 2009
  3. pmc ncDNA and drift drive binding site accumulation
    Troy Ruths
    Department of Computer Science, Rice University, TX, Houston, USA
    BMC Evol Biol 12:159. 2012
  4. pmc Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology
    Troy Ruths
    Department of Computer Science, Rice University, Houston, TX 77251, USA
    Proc Natl Acad Sci U S A 110:7754-9. 2013
  5. pmc Modeling protein structure at near atomic resolutions with Gorgon
    Matthew L Baker
    National Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA
    J Struct Biol 174:360-73. 2011

Detail Information

Publications5

  1. pmc Boosting forward-time population genetic simulators through genotype compression
    Troy Ruths
    Department of Computer Science, Rice University, Houston, USA
    BMC Bioinformatics 14:192. 2013
    ..Such simulations may be data-intensive, depending on the settings to the various parameters controlling them. In particular, for certain settings, the data footprint may quickly exceed the memory of a single compute node...
  2. pmc GS2: an efficiently computable measure of GO-based similarity of gene sets
    Troy Ruths
    Department of Computer Science, Rice University, 6100 Main Street, MS 132, Houston, TX, USA
    Bioinformatics 25:1178-84. 2009
    ..However, as more data becomes available and gene sets used for analysis become larger, such pair-based calculation becomes prohibitive...
  3. pmc ncDNA and drift drive binding site accumulation
    Troy Ruths
    Department of Computer Science, Rice University, TX, Houston, USA
    BMC Evol Biol 12:159. 2012
    ..The availability of TFBS data from many organisms provides an opportunity to explore these issues, particularly from an evolutionary perspective...
  4. pmc Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology
    Troy Ruths
    Department of Computer Science, Rice University, Houston, TX 77251, USA
    Proc Natl Acad Sci U S A 110:7754-9. 2013
    ....
  5. pmc Modeling protein structure at near atomic resolutions with Gorgon
    Matthew L Baker
    National Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA
    J Struct Biol 174:360-73. 2011
    ..Examples from cryo-EM maps of Rotavirus and Rice Dwarf Virus are used to demonstrate its applicability to modeling protein structure...