Jiri Adamec

Summary

Affiliation: Purdue University
Country: USA

Publications

  1. doi request reprint Development of a new method for improved identification and relative quantification of unknown metabolites in complex samples: determination of a triterpenoid metabolic fingerprint for the in situ characterization of Ganoderma bioactive compounds
    Jiri Adamec
    Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA
    J Sep Sci 32:4052-8. 2009
  2. doi request reprint Elucidating causes of Diporeia decline in the Great Lakes via metabolomics: physiological responses after exposure to different stressors
    Suman Maity
    Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
    Physiol Biochem Zool 86:213-23. 2013
  3. pmc Comparison of genomic and proteomic data in recurrent airway obstruction affected horses using Ingenuity Pathway Analysis®
    Julien Racine
    Department of Clinical Veterinary Medicine, Vetsuisse Faculty, University of Berne, Berne, Switzerland
    BMC Vet Res 7:48. 2011
  4. ncbi request reprint An automated method for the analysis of stable isotope labeling data in proteomics
    Xiang Zhang
    Beyond Genomics Inc, Waltham, Massachusetts, USA
    J Am Soc Mass Spectrom 16:1181-91. 2005
  5. doi request reprint Liver proteome response of largemouth bass (Micropterus salmoides) exposed to several environmental contaminants: potential insights into biomarker development
    Brian C Sanchez
    Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA
    Aquat Toxicol 95:52-9. 2009
  6. ncbi request reprint Data pre-processing in liquid chromatography-mass spectrometry-based proteomics
    Xiang Zhang
    Bindley Bioscience Center, Purdue University West Lafayette, IN, USA
    Bioinformatics 21:4054-9. 2005
  7. pmc In vitro stable isotope labeling for discovery of novel metabolites by liquid chromatography-mass spectrometry: Confirmation of gamma-tocopherol metabolism in human A549 cell
    Wen Chu Yang
    Bindley Bioscience Center, Purdue University, 1203 W State Street, West Lafayette, IN 47907, USA
    J Chromatogr A 1217:667-75. 2010
  8. pmc Effect of salts on the Co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae
    Elizabeth Casey
    Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, IN 47907, USA
    Biotechnol Biofuels 6:83. 2013
  9. doi request reprint Increased expression of GAPDH protein is not indicative of nitrosative stress or apoptosis in liver of starved rainbow trout (Oncorhynchus mykiss)
    Bradley L Baumgarner
    Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA
    Fish Physiol Biochem 38:319-27. 2012
  10. doi request reprint Starvation causes disturbance in amino acid and fatty acid metabolism in Diporeia
    Suman Maity
    Department of Forestry and Natural Resources, Purdue University, 195 Marsteller St, West Lafayette, IN 47907, United States
    Comp Biochem Physiol B Biochem Mol Biol 161:348-55. 2012

Collaborators

Detail Information

Publications18

  1. doi request reprint Development of a new method for improved identification and relative quantification of unknown metabolites in complex samples: determination of a triterpenoid metabolic fingerprint for the in situ characterization of Ganoderma bioactive compounds
    Jiri Adamec
    Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA
    J Sep Sci 32:4052-8. 2009
    ..32 mg/g; GA F: 0.43 mg/g and GA H: 0.85 mg/g) extracts. The method was also used for the evaluation of bioavailability of triterpenes after an oral application and demonstrated the presence of G. lucidum triterpenes in plasma...
  2. doi request reprint Elucidating causes of Diporeia decline in the Great Lakes via metabolomics: physiological responses after exposure to different stressors
    Suman Maity
    Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
    Physiol Biochem Zool 86:213-23. 2013
    ..Subsequent comparisons of these stressor-specific metabolic responses with metabolomes of a feral Diporeia population would help identify stressors affecting Diporeia populations throughout the Great Lakes...
  3. pmc Comparison of genomic and proteomic data in recurrent airway obstruction affected horses using Ingenuity Pathway Analysis®
    Julien Racine
    Department of Clinical Veterinary Medicine, Vetsuisse Faculty, University of Berne, Berne, Switzerland
    BMC Vet Res 7:48. 2011
    ..The analysis was carried out with Ingenuity Pathway Analysis® bioinformatics software...
  4. ncbi request reprint An automated method for the analysis of stable isotope labeling data in proteomics
    Xiang Zhang
    Beyond Genomics Inc, Waltham, Massachusetts, USA
    J Am Soc Mass Spectrom 16:1181-91. 2005
    ..The experimental results correlated well with known mixing ratios...
  5. doi request reprint Liver proteome response of largemouth bass (Micropterus salmoides) exposed to several environmental contaminants: potential insights into biomarker development
    Brian C Sanchez
    Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA
    Aquat Toxicol 95:52-9. 2009
    ..This work supports the further evaluation of several of these proteins as biomarkers of contaminant exposure in fish...
  6. ncbi request reprint Data pre-processing in liquid chromatography-mass spectrometry-based proteomics
    Xiang Zhang
    Bindley Bioscience Center, Purdue University West Lafayette, IN, USA
    Bioinformatics 21:4054-9. 2005
    ..It is necessary to develop a data mining system to perform peak quantification, peak alignment and data quality assurance...
  7. pmc In vitro stable isotope labeling for discovery of novel metabolites by liquid chromatography-mass spectrometry: Confirmation of gamma-tocopherol metabolism in human A549 cell
    Wen Chu Yang
    Bindley Bioscience Center, Purdue University, 1203 W State Street, West Lafayette, IN 47907, USA
    J Chromatogr A 1217:667-75. 2010
    ..In addition, the developed LC-MS method can also be used for the fast and sensitive quantitative analysis of gamma-tocopherol and other forms of vitamin E related compounds...
  8. pmc Effect of salts on the Co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae
    Elizabeth Casey
    Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, IN 47907, USA
    Biotechnol Biofuels 6:83. 2013
    ..This paper investigates the effect of salts on Saccharomyces cerevisiae 424A(LNH-ST), a yeast strain capable of effectively co-fermenting glucose and xylose...
  9. doi request reprint Increased expression of GAPDH protein is not indicative of nitrosative stress or apoptosis in liver of starved rainbow trout (Oncorhynchus mykiss)
    Bradley L Baumgarner
    Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA
    Fish Physiol Biochem 38:319-27. 2012
    ....
  10. doi request reprint Starvation causes disturbance in amino acid and fatty acid metabolism in Diporeia
    Suman Maity
    Department of Forestry and Natural Resources, Purdue University, 195 Marsteller St, West Lafayette, IN 47907, United States
    Comp Biochem Physiol B Biochem Mol Biol 161:348-55. 2012
    ..The next step is to apply this new knowledge for evaluating nutritional status of feral Diporeia to elucidate the underlying cause(s) responsible for their decline in the Great Lakes...
  11. doi request reprint Quantification of pentose phosphate pathway (PPP) metabolites by liquid chromatography-mass spectrometry (LC-MS)
    Amber Jannasch
    Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA
    Methods Mol Biol 708:159-71. 2011
    ..Derivatization also increases hydrophobicity of the metabolites enabling their effective separation using reversed-phase chromatography...
  12. ncbi request reprint Enhancement of the LC/MS analysis of fatty acids through derivatization and stable isotope coding
    Wen Chu Yang
    Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
    Anal Chem 79:5150-7. 2007
    ..Absolute quantification was achieved by adding differentially labeled fatty acid standards to experimental samples containing unknown quantities of fatty acids. Utility of the method was examined in the analysis of human serum samples...
  13. pmc Stable isotope-coded quaternization for comparative quantification of estrogen metabolites by high-performance liquid chromatography-electrospray ionization mass spectrometry
    Wen Chu Yang
    Bindley Bioscience Center, Purdue University, West Lafayette, IN 47907, USA
    J Chromatogr B Analyt Technol Biomed Life Sci 870:233-40. 2008
    ..A pooled breast cancer serum sample was analyzed using the described method, and 15 estrogens were detected in the range of 80-530 pg/mL...
  14. pmc Comparative metabolite profiling of carboxylic acids in rat urine by CE-ESI MS/MS through positively pre-charged and (2)H-coded derivatization
    Wen Chu Yang
    Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA
    Electrophoresis 29:4549-60. 2008
    ..Comparative analysis was also performed on two individual urine samples derivatized with BAMP and N-butyl-d9-4-aminomethyl-pyridinium iodide. The metabolite profiling variation between these two samples was clearly visualized...
  15. doi request reprint Oxidative stress studies in yeast with a frataxin mutant: a proteomics perspective
    Jin Hee Kim
    Department of Chemistry, Purdue University, West Lafayette, Idiana 47907, USA
    J Proteome Res 9:730-6. 2010
    ..Oxidized proteins were selected by affinity chromatography, and following trypsin digestion, peptide fragments were identified by RPLC-MS/MS. A total of 53 proteins were identified in both wild-type and mutant cells, respectively...
  16. ncbi request reprint Effects of hindlimb unloading and bisphosphonates on the serum proteome of rats
    Yongdong Zhao
    Department of Foods and Nutrition, Purdue University, 700 W State St, West Lafayette, IN 47907 2059, USA
    Bone 41:646-58. 2007
    ..e. drug related), and 17 common to HU and HUA (e.g. potential mental stress or muscle loss markers). Spots were identified by LC-MS/MS after in-gel trypsin digestion and were found to relate to a variety of physiological functions...
  17. doi request reprint Simultaneous quantification of metabolites involved in central carbon and energy metabolism using reversed-phase liquid chromatography-mass spectrometry and in vitro 13C labeling
    Wen Chu Yang
    Bindley Bioscience Center, Purdue University, West Lafayette, Indiana 47907, USA
    Anal Chem 80:9508-16. 2008
    ..Thirty common metabolites involved in glycolysis, the pentose phosphate pathway, and tricarboxylic acid cycle were identified and quantified from yeast lysate with a relative standard deviation of less than 10%...
  18. doi request reprint Development of GCxGC/TOF-MS metabolomics for use in ecotoxicological studies with invertebrates
    Kimberly Ralston-Hooper
    Department of Forestry and Natural Resources, Purdue University, 195 Marsteller St, West Lafayette, IN 47907, United States
    Aquat Toxicol 88:48-52. 2008
    ....