Maitreya J Dunham

Summary

Affiliation: Princeton University
Country: USA

Publications

  1. pmc Synthetic ecology: a model system for cooperation
    Maitreya J Dunham
    Lewis Sigler Institute, Princeton University, Princeton, NJ 08544, USA
    Proc Natl Acad Sci U S A 104:1741-2. 2007
  2. ncbi request reprint Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
    Science 311:1932-6. 2006
  3. doi request reprint Comparing whole genomes using DNA microarrays
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Department of Molecular Biology, Carl Icahn Laboratory, Princeton University, Princeton, New Jersey 08544, USA
    Nat Rev Genet 9:291-302. 2008
  4. pmc The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA
    PLoS Genet 4:e1000303. 2008
  5. pmc Translocation and assembly of mitochondrially coded Saccharomyces cerevisiae cytochrome c oxidase subunit Cox2 by Oxa1 and Yme1 in the absence of Cox18
    Heather L Fiumera
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
    Genetics 182:519-28. 2009
  6. pmc Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae
    Matthew J Brauer
    Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA
    Genetics 173:1813-6. 2006
  7. pmc Predicting cellular growth from gene expression signatures
    Edoardo M Airoldi
    Lewis Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Princeton University, Princeton, New Jersey, United States of America
    PLoS Comput Biol 5:e1000257. 2009
  8. pmc Global mapping of transposon location
    Abram Gabriel
    Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey, United States of America
    PLoS Genet 2:e212. 2006
  9. ncbi request reprint Effects of aneuploidy on cellular physiology and cell division in haploid yeast
    Eduardo M Torres
    Center for Cancer Research, Howard Hughes Medical Institute, Massachusetts Institute of Technology, E17 233, 40 Ames Street, Cambridge, MA 02139, USA
    Science 317:916-24. 2007
  10. ncbi request reprint Accurate detection of aneuploidies in array CGH and gene expression microarray data
    Chad L Myers
    Lewis Sigler Institute for Integrative Genomics, Carl Icahn Laboratory
    Bioinformatics 20:3533-43. 2004

Collaborators

Detail Information

Publications12

  1. pmc Synthetic ecology: a model system for cooperation
    Maitreya J Dunham
    Lewis Sigler Institute, Princeton University, Princeton, NJ 08544, USA
    Proc Natl Acad Sci U S A 104:1741-2. 2007
  2. ncbi request reprint Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
    Science 311:1932-6. 2006
    ..We applied this approach to elucidate the genetic basis of phenotypic variants and to identify the small number of single-base pair changes accumulated during experimental evolution of yeast...
  3. doi request reprint Comparing whole genomes using DNA microarrays
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Department of Molecular Biology, Carl Icahn Laboratory, Princeton University, Princeton, New Jersey 08544, USA
    Nat Rev Genet 9:291-302. 2008
    ....
  4. pmc The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
    David Gresham
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA
    PLoS Genet 4:e1000303. 2008
    ..Thus, in addition to answering basic mechanistic questions about evolutionary mechanisms, our work suggests that experimental evolution can also shed light on the function and regulation of individual metabolic pathways...
  5. pmc Translocation and assembly of mitochondrially coded Saccharomyces cerevisiae cytochrome c oxidase subunit Cox2 by Oxa1 and Yme1 in the absence of Cox18
    Heather L Fiumera
    Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
    Genetics 182:519-28. 2009
    ....
  6. pmc Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae
    Matthew J Brauer
    Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA
    Genetics 173:1813-6. 2006
    ..We apply a probabilistic model to the progeny of a single cross and as little as two microarray hybridizations to reliably map an auxotrophic marker, a Mendelian trait, and a major-effect quantitative trait locus...
  7. pmc Predicting cellular growth from gene expression signatures
    Edoardo M Airoldi
    Lewis Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, Princeton University, Princeton, New Jersey, United States of America
    PLoS Comput Biol 5:e1000257. 2009
    ..Data and tools enabling others to apply our methods are available at http://function.princeton.edu/growthrate...
  8. pmc Global mapping of transposon location
    Abram Gabriel
    Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, New Jersey, United States of America
    PLoS Genet 2:e212. 2006
    ..This unique whole genome view of transposon location will facilitate our exploration of transposon dynamics, as well as defining bases for individual differences and adaptive potential...
  9. ncbi request reprint Effects of aneuploidy on cellular physiology and cell division in haploid yeast
    Eduardo M Torres
    Center for Cancer Research, Howard Hughes Medical Institute, Massachusetts Institute of Technology, E17 233, 40 Ames Street, Cambridge, MA 02139, USA
    Science 317:916-24. 2007
    ..We conclude that aneuploidy causes not only a proliferative disadvantage but also a set of phenotypes that is independent of the identity of the individual extra chromosomes...
  10. ncbi request reprint Accurate detection of aneuploidies in array CGH and gene expression microarray data
    Chad L Myers
    Lewis Sigler Institute for Integrative Genomics, Carl Icahn Laboratory
    Bioinformatics 20:3533-43. 2004
    ..There is a need for a general and robust method for identification of aneuploidies of any size from both array CGH and gene expression microarray data...
  11. pmc Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
    Maitreya J Dunham
    Department of Genetics, and Howard Hughes Medical Institute and Department of Biochemistry, Stanford University Medical School, Stanford, CA 94305, USA
    Proc Natl Acad Sci U S A 99:16144-9. 2002
    ....
  12. pmc Functional analysis of gene duplications in Saccharomyces cerevisiae
    Yuanfang Guan
    Lewis Sigler Institute for Integrative Genomics, Carl Icahn Laboratory, New Jersey, USA
    Genetics 175:933-43. 2007
    ..Furthermore, by identifying these functional disparities between the two types of duplicates, we reconcile previous disputes on the relationship between sequence divergence and expression divergence or essentiality...