Research Topics
| John E CarlsonSummaryAffiliation: Pennsylvania State University Country: USA Publications
| Collaborators
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Detail Information
Publications
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structureAndrea Zuccolo
Arizona Genomics Institute, School of Plant Sciences and BIO5 Institute for Collaborative Research, University of Arizona, 1657 East Helen Street, Tucson, AZ 85721, USA
Genome Biol 12:R48. 2011..A physical map, BAC end sequences and sample shotgun sequences provide a first view of the 870 Mbp Amborella genome...- Floral gene resources from basal angiosperms for comparative genomics researchVictor A Albert
Natural History Museum, University of Oslo, NO 0318 Oslo, Norway
BMC Plant Biol 5:5. 2005.... - Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomicsWenming Wang
Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
BMC Plant Biol 5:10. 2005..Although the lycophytes occupy an important phylogenetic position for understanding the evolution of plants and their genomes, no genomic resources exist for this group of plants... - Conservation and divergence of microRNAs in PopulusAbdelali Barakat
Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, 403 Life Sciences Building, The Pennsylvania State University, University Park, PA 16802, USA
BMC Genomics 8:481. 2007..In this study, we analyzed expressed small RNAs from leaves and vegetative buds of Populus using high throughput pyrosequencing... - Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliidsZhengqiu Cai
Section of Integrative Biology and Institute of Cellular and Molecular Biology, Patterson Laboratories 141, University of Texas, Austin, TX 78712, USA
BMC Evol Biol 6:77. 2006.... 
EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicotJohn E Carlson
The School of Forest Resources and Huck Institutes for Life Sciences, Pennsylvania State University, 323 Forest Resources Building, University Park, 16802, USA
Plant Mol Biol 62:351-69. 2006....- Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides x P. nigra): evidence from herbivore damage for subfunctionalization and functional divergenceAbdelali Barakat
The School of Forest Resources, and The Huck Institutes of the Life Sciences, Pennsylvania State University, 324 Forest Resources Building, University Park, PA 16802, USA
BMC Plant Biol 10:100. 2010..Expression of CAD/CAD-like genes in Populus tissues (xylem, leaves, and barks) was analyzed in herbivore-treated and non-treated plants by real time quantitative RT-PCR... - Chestnut resistance to the blight disease: insights from transcriptome analysisAbdelali Barakat
The School of Forest Resources, and The Huck Institutes of the Life Sciences, Pennsylvania State University, 326 Forest Resources Building, University Park, PA 16802, USA
BMC Plant Biol 12:38. 2012.... - Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infectionAbdelali Barakat
The School of Forest Resources, Department of Horticulture, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA
BMC Plant Biol 9:51. 2009..We also identified several candidate genes that may underline the difference in resistance to Cryphonectria parasitica between American chestnut and Chinese chestnut... - The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expressionAbdelali Barakat
The School of Forest Resources, The Huck Institutes of the Life Sciences, Pennsylvania State University, 324 Forest Resources Building, University Park, PA 16802, USA
BMC Plant Biol 9:26. 2009..This is the first comprehensive study on the CAD gene family in woody plants including genome organization, gene structure, phylogeny across land plant lineages, and expression profiling in Populus... 
Comparison of gene order of GIGANTEA loci in yellow-poplar, monocots, and eudicotsHaiying Liang
School of Forest Resources and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA
Genome 53:533-44. 2010..In addition, evidence for transposition and large insertions and duplications was found, suggesting multiple and complex mechanisms of basal angiosperm genome evolution...- Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in PopulusAbdelali Barakat
The School of Forest Resources and The Huck Institutes of the Life Sciences, The Pennsylvania State University, 326 Forest Resources Building, University Park, PA 16802, USA
Gene 479:37-46. 2011..The divergence of protein sequences, the phylogenetic distribution, and the expression of COMT and COMT-like genes suggest that they have evolved different functions or tissue specificities following duplications... - Within-plant signalling via volatiles overcomes vascular constraints on systemic signalling and primes responses against herbivoresChristopher J Frost
Center for Chemical Ecology, Pennsylvania State University, University Park, PA 16802, USA
Ecol Lett 10:490-8. 2007.... - Isolation of ESTs from cacao (Theobroma cacao L.) leaves treated with inducers of the defense responseJoseph A Verica
Department of Horticulture, College of Agricultural Sciences, The Pennsylvania State University, University Park, PA 16802, USA
Plant Cell Rep 23:404-13. 2004..Additionally, we investigated gene activation by a phytotoxic elicitor-like protein, Nep1. We have identified a unigene set of 1,256 members, including 330 members representing genes induced during the defense response... - Large-scale identification of microRNAs from a basal eudicot (Eschscholzia californica) and conservation in flowering plantsAbdelali Barakat
Department of Biology, Institute of Molecular Evolutionary Genetics, 403 Life Sciences Building, The Pennsylvania State University, University Park, PA 16802, USA
Plant J 51:991-1003. 2007.... - Plant defense priming against herbivores: getting ready for a different battleChristopher J Frost
Center for Chemical Ecology, Pennsylvania State University, University Park, PA 16802, USA
Plant Physiol 146:818-24. 2008 - Comparison of next generation sequencing technologies for transcriptome characterizationP Kerr Wall
Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA
BMC Genomics 10:347. 2009..19). We also generated 454-GS20 sequences and de novo assemblies for the basal eudicot California poppy (Eschscholzia californica) and the magnoliid avocado (Persea americana) using a variety of methods for cDNA synthesis... - Priming defense genes and metabolites in hybrid poplar by the green leaf volatile cis-3-hexenyl acetateChristopher J Frost
Center for Chemical Ecology, Pennsylvania State University, University Park, PA 16802, USA
New Phytol 180:722-34. 2008..Thus, woody plants can detect and use z3HAC as a signal to prime defenses before actually experiencing damage. GLVs may therefore have important ecological functions in arboreal ecosystems... - Microbial community profiling to investigate transmission of bacteria between life stages of the wood-boring beetle, Anoplophora glabripennisScott M Geib
Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
Microb Ecol 58:199-211. 2009.... - Lignin degradation in wood-feeding insectsScott M Geib
Department of Entomology and Center for Chemical Ecology, Pennsylvania State University, University Park, PA 16802, USA
Proc Natl Acad Sci U S A 105:12932-7. 2008..This is a soft-rot fungus that may be contributing to wood degradation. These results transform our understanding of lignin degradation by wood-feeding insects... - Evidence for oxidative stress in sugar maple stands growing on acidic, nutrient imbalanced forest soilsSamuel B St Clair
Intercollegiate Graduate Program in Ecological and Molecular Plant Physiology, The Pennsylvania State University, 102 Tyson Building, University Park, PA, 16802, USA
Oecologia 145:258-69. 2005.... - Widespread genome duplications throughout the history of flowering plantsLiying Cui
Department of Biology, The Pennsylvania State University, University Park 16802, USA
Genome Res 16:738-49. 2006..We hypothesize that evidence of an ancient duplication observed in the Nuphar data may represent a genome duplication in the common ancestor of all or most extant angiosperms, except Amborella... - The Amborella genome: an evolutionary reference for plant biologyDouglas E Soltis
Department of Botany and the Genetics Institute, University of Florida, Gainesville, FL 32611, USA
Genome Biol 9:402. 2008..The nuclear genome sequence of Amborella trichopoda, the sister species to all other extant angiosperms, will be an exceptional resource for plant genomics...