Yuri A Gorby

Summary

Affiliation: Pacific Northwest National Laboratory
Country: USA

Publications

  1. ncbi request reprint Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria
    Chongxuan Liu
    Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Biotechnol Bioeng 80:637-49. 2002
  2. ncbi request reprint Combined spectroscopic and topographic characterization of nanoscale domains and their distributions of a redox protein on bacterial cell surfaces
    Vasudevanpillai Biju
    Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Langmuir 23:1333-8. 2007
  3. pmc Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms
    Yuri A Gorby
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Proc Natl Acad Sci U S A 103:11358-63. 2006
  4. pmc Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA
    Liang Shi
    Microbiology Group, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
    J Bacteriol 190:5512-6. 2008
  5. pmc Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1
    Liang Shi
    Microbiology Group, Pacific Northwest National Laboratory, 902 Battelle Blvd, P O Box 999, MSIN P7 50, Richland, WA 99354, USA
    J Bacteriol 188:4705-14. 2006
  6. ncbi request reprint Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprints
    David S Wunschel
    Analytical Chemistry, Pacific Northwest National Laboratory, MS P8 08, PO Box 999, Richland WA 99352, USA
    J Microbiol Methods 62:259-71. 2005
  7. ncbi request reprint Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach
    Ruihua Fang
    Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland Washington 99352, USA
    Mol Cell Proteomics 5:714-25. 2006
  8. ncbi request reprint NMR methods for in situ biofilm metabolism studies
    Paul D Majors
    Pacific Northwest National Laboratory, MSIN K8 98, Richland, WA 99352, USA
    J Microbiol Methods 62:337-44. 2005
  9. pmc Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants
    Orianna Bretschger
    Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
    Appl Environ Microbiol 73:7003-12. 2007
  10. pmc The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
    Dwayne A Elias
    Department of Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA
    Arch Microbiol 189:313-24. 2008

Collaborators

Detail Information

Publications12

  1. ncbi request reprint Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria
    Chongxuan Liu
    Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Biotechnol Bioeng 80:637-49. 2002
    ..The more precise rate coefficients of the first-order model provided a better means than the Monod parameters, to quantitatively compare the reduction rates between metals, electron donors, and DMRB species...
  2. ncbi request reprint Combined spectroscopic and topographic characterization of nanoscale domains and their distributions of a redox protein on bacterial cell surfaces
    Vasudevanpillai Biju
    Fundamental Science Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Langmuir 23:1333-8. 2007
    ..Our results on the distributions of redox proteins on microbial cell surfaces will be helpful for a mechanistic understanding of the behaviors of surface proteins and their interactions with redox environments...
  3. pmc Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms
    Yuri A Gorby
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Proc Natl Acad Sci U S A 103:11358-63. 2006
    ....
  4. pmc Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA
    Liang Shi
    Microbiology Group, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
    J Bacteriol 190:5512-6. 2008
    ....
  5. pmc Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1
    Liang Shi
    Microbiology Group, Pacific Northwest National Laboratory, 902 Battelle Blvd, P O Box 999, MSIN P7 50, Richland, WA 99354, USA
    J Bacteriol 188:4705-14. 2006
    ..oneidensis MR-1...
  6. ncbi request reprint Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprints
    David S Wunschel
    Analytical Chemistry, Pacific Northwest National Laboratory, MS P8 08, PO Box 999, Richland WA 99352, USA
    J Microbiol Methods 62:259-71. 2005
    ..The effect of varying growth temperature on Y. enterocolitica was also examined. While the anticipated effects on phenotype were observed, the MALDI-MS technique provided the proper identification...
  7. ncbi request reprint Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach
    Ruihua Fang
    Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland Washington 99352, USA
    Mol Cell Proteomics 5:714-25. 2006
    ..Numerous proteins involved in anaerobic energy metabolism exhibited up to a 10-fold increase in relative abundance when S. oneidensis was transitioned from aerobic to suboxic conditions...
  8. ncbi request reprint NMR methods for in situ biofilm metabolism studies
    Paul D Majors
    Pacific Northwest National Laboratory, MSIN K8 98, Richland, WA 99352, USA
    J Microbiol Methods 62:337-44. 2005
    ..These results represent progress toward our ultimate goal of correlating time- and depth-resolved metabolism and mass transport with gene expression in live in situ biofilms using combined NMR/optical microscopy techniques...
  9. pmc Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants
    Orianna Bretschger
    Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
    Appl Environ Microbiol 73:7003-12. 2007
    ..Overall, these data suggest a very complex picture of electron transfer to solid and soluble substrates by S. oneidensis MR-1...
  10. pmc The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
    Dwayne A Elias
    Department of Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA
    Arch Microbiol 189:313-24. 2008
    ..By decreasing cell to cell variability, higher quality samples will allow for the interpretive accuracy necessary for drawing conclusions relevant to microbial systems biology research...
  11. pmc The molecular density of states in bacterial nanowires
    Mohamed Y El-Naggar
    Department of Earth Sciences and Biological Sciences, University of Southern California, Los Angeles, California, USA
    Biophys J 95:L10-2. 2008
    ..Our results indicate that the molecular constituents along the Shewanella nanowires possess an intricate electronic structure that plays a role in mediating transport...
  12. pmc Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
    Eugene Kolker
    BIATECH, 19310 North Creek Parkway, Suite 115, Bothell, WA 98011, USA
    Proc Natl Acad Sci U S A 102:2099-104. 2005
    ..We propose that this integrative approach offers a valuable means to undertake the enormous challenge of characterizing the rapidly growing number of hypothetical proteins with each newly sequenced genome...