James P Carson

Summary

Affiliation: Pacific Northwest National Laboratory
Country: USA

Publications

  1. pmc Adaptive generation of multimaterial grids from imaging data for biomedical Lagrangian fluid-structure simulations
    James P Carson
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, WA, USA
    Biomech Model Mechanobiol 9:187-201. 2010
  2. pmc High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations
    James P Carson
    Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352, USA
    Comput Med Imaging Graph 34:572-8. 2010
  3. pmc Phase-contrast MRI and CFD modeling of apparent ³He gas flow in rat pulmonary airways
    Kevin R Minard
    Pacific Northwest National Laboratory, P O Box 999, Richland, WA 99352, USA
    J Magn Reson 221:129-38. 2012
  4. doi request reprint An efficient algorithm for mapping imaging data to 3D unstructured grids in computational biomechanics
    Daniel R Einstein
    Systems Toxicology, Pacific Northwest National Laboratory, Richland, WA, U S A
    Int j numer method biomed eng 29:1-16. 2013
  5. pmc An automated self-similarity analysis of the pulmonary tree of the Sprague-Dawley rat
    Daniel R Einstein
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Anat Rec (Hoboken) 291:1628-48. 2008
  6. doi request reprint In situ casting and imaging of the rat airway tree for accurate 3D reconstruction
    Richard E Jacob
    Department of Systems Toxicology, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Exp Lung Res 39:249-57. 2013
  7. pmc Dynamic multiscale boundary conditions for 4D CT of healthy and emphysematous rats
    Richard E Jacob
    Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America
    PLoS ONE 8:e65874. 2013
  8. pmc Comparison of two quantitative methods of discerning airspace enlargement in smoke-exposed mice
    Richard E Jacob
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, Washington, USA
    PLoS ONE 4:e6670. 2009
  9. doi request reprint Detecting Radiation-Induced Injury Using Rapid 3D Variogram Analysis of CT Images of Rat Lungs
    Richard E Jacob
    Systems Toxicology, 902 Battelle Blvd, Pacific Northwest National Laboratory, Richland, WA 99352 Electronic address
    Acad Radiol 20:1264-71. 2013
  10. doi request reprint Detecting distance between injected microspheres and target tumor via 3D reconstruction of tissue sections
    James P Carson
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Conf Proc IEEE Eng Med Biol Soc 2012:1149-52. 2012

Detail Information

Publications12

  1. pmc Adaptive generation of multimaterial grids from imaging data for biomedical Lagrangian fluid-structure simulations
    James P Carson
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, WA, USA
    Biomech Model Mechanobiol 9:187-201. 2010
    ....
  2. pmc High resolution lung airway cast segmentation with proper topology suitable for computational fluid dynamic simulations
    James P Carson
    Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA 99352, USA
    Comput Med Imaging Graph 34:572-8. 2010
    ..Here we describe a new technique for segmenting airways with proper topology and apply the approach to an image volume generated by magnetic resonance imaging of a silicone cast created from an excised monkey lung...
  3. pmc Phase-contrast MRI and CFD modeling of apparent ³He gas flow in rat pulmonary airways
    Kevin R Minard
    Pacific Northwest National Laboratory, P O Box 999, Richland, WA 99352, USA
    J Magn Reson 221:129-38. 2012
    ..Higher-fidelity testing of pulmonary airflow predictions should therefore be possible with future imaging improvements...
  4. doi request reprint An efficient algorithm for mapping imaging data to 3D unstructured grids in computational biomechanics
    Daniel R Einstein
    Systems Toxicology, Pacific Northwest National Laboratory, Richland, WA, U S A
    Int j numer method biomed eng 29:1-16. 2013
    ..Execution times and parallel performance are reported for each case...
  5. pmc An automated self-similarity analysis of the pulmonary tree of the Sprague-Dawley rat
    Daniel R Einstein
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Anat Rec (Hoboken) 291:1628-48. 2008
    ..Our analysis shows that airway diameters and lengths have both a deterministic and stochastic character...
  6. doi request reprint In situ casting and imaging of the rat airway tree for accurate 3D reconstruction
    Richard E Jacob
    Department of Systems Toxicology, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Exp Lung Res 39:249-57. 2013
    ..Animal work was approved by the Institutional Animal Care and Use Committee of Pacific Northwest National Laboratory...
  7. pmc Dynamic multiscale boundary conditions for 4D CT of healthy and emphysematous rats
    Richard E Jacob
    Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America
    PLoS ONE 8:e65874. 2013
    ..Volume maps in diseased rats show increased compliance and ventilation heterogeneity. Future predictive multiscale models of rodent respiration may leverage such volume maps as boundary conditions...
  8. pmc Comparison of two quantitative methods of discerning airspace enlargement in smoke-exposed mice
    Richard E Jacob
    Biological Monitoring and Modeling, Pacific Northwest National Laboratory, Richland, Washington, USA
    PLoS ONE 4:e6670. 2009
    ..Therefore, D(2) may serve as a more accurate screening measure for detecting early lung disease than L(m)...
  9. doi request reprint Detecting Radiation-Induced Injury Using Rapid 3D Variogram Analysis of CT Images of Rat Lungs
    Richard E Jacob
    Systems Toxicology, 902 Battelle Blvd, Pacific Northwest National Laboratory, Richland, WA 99352 Electronic address
    Acad Radiol 20:1264-71. 2013
    ..To investigate the ability of variogram analysis of octree-decomposed computed tomography (CT) images and volume change maps to detect radiation-induced damage in rat lungs...
  10. doi request reprint Detecting distance between injected microspheres and target tumor via 3D reconstruction of tissue sections
    James P Carson
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Conf Proc IEEE Eng Med Biol Soc 2012:1149-52. 2012
    ..Distance from the microspheres to the tumor was calculated using a fast deterministic point inclusion method...
  11. doi request reprint Visualization of high resolution spatial mass spectrometric data during acquisition
    Mathew Thomas
    Pacific Northwest National Laboratory, Richland, WA 99354, USA
    Conf Proc IEEE Eng Med Biol Soc 2012:5545-8. 2012
    ..This software approach is a significant advance over the previous state-of-the art methods that required the conversion of the RAW data using one software, manual assembly of the data, and visualization in another software...
  12. pmc Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain
    Matthew A Enlow
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Conf Proc IEEE Eng Med Biol Soc 2011:8086-9. 2011
    ..Standard reconstruction and registration without the lossless approach resulted in errors in cellular quantities of ∼ 8%...