Affiliation: Oregon Health and Science University
- Consensus framework for exploring microarray data using multiple clustering methodsTed Laderas
Informatics Shared Resource, OHSU Cancer Institute, Portland, Oregon 97201, USA
OMICS 11:116-28. 2007..It also provides a flexible environment to benchmark new clustering algorithms. Consense is currently available as an installable R/Bioconductor package (http://www.ohsucancer.com/isrdev/consense/)...
- TandTRAQ: an open-source tool for integrated protein identification and quantitationTed Laderas
Informatics Shared Resource, OHSU Cancer Institute, Oregon Health and Science University, Portland, Oregon 97212, USA
Bioinformatics 23:3394-6. 2007..The utility runs from the command-line and can be easily integrated into a pipeline for automation. Availability: The TandTRAQ Perl scripts are freely available for download at http://www.ohsucancer.com/isrdev/tandtraq/..
- High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPsNicole A R Walter
Research and Development Service, Portland VA Medical Center, Portland, OR, USA
BMC Genomics 10:379. 2009..With the advent of next-generation, high-throughput sequencing, we are now in a position to determine to what extent polymorphisms are currently cryptic in such models and their impact on downstream analyses...